Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PGN40_RS15015 Genome accession   NZ_CP115914
Coordinates   3035686..3036927 (-) Length   413 a.a.
NCBI ID   WP_040056632.1    Uniprot ID   A0A1X7D7E8
Organism   Priestia filamentosa strain AZC66     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3030686..3041927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGN40_RS14995 (PGN40_14995) spoVS 3031088..3031348 (-) 261 WP_019391885.1 stage V sporulation protein SpoVS -
  PGN40_RS15000 (PGN40_15000) - 3031526..3032320 (-) 795 WP_019391884.1 TIGR00282 family metallophosphoesterase -
  PGN40_RS15005 (PGN40_15005) rny 3032413..3033972 (-) 1560 WP_019391883.1 ribonuclease Y -
  PGN40_RS15010 (PGN40_15010) recA 3034442..3035479 (-) 1038 WP_040056631.1 recombinase RecA Machinery gene
  PGN40_RS15015 (PGN40_15015) cinA 3035686..3036927 (-) 1242 WP_040056632.1 competence/damage-inducible protein A Machinery gene
  PGN40_RS15020 (PGN40_15020) pgsA 3036995..3037573 (-) 579 WP_019391880.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PGN40_RS15025 (PGN40_15025) - 3037623..3038579 (-) 957 WP_240516643.1 helix-turn-helix domain-containing protein -
  PGN40_RS15030 (PGN40_15030) - 3038592..3039383 (-) 792 WP_019391878.1 YmfK family protein -
  PGN40_RS15035 (PGN40_15035) - 3039547..3039807 (-) 261 WP_040056634.1 DUF3243 domain-containing protein -
  PGN40_RS15040 (PGN40_15040) ymfI 3039863..3040579 (-) 717 WP_019391876.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45272.35 Da        Isoelectric Point: 5.1410

>NTDB_id=774381 PGN40_RS15015 WP_040056632.1 3035686..3036927(-) (cinA) [Priestia filamentosa strain AZC66]
MNAEIIGVGSELLLGQIANTNAQFLSKQLASLGVNVYYHTVVGDNPKRLETAIEAAKERADLLVFTGGLGPTKDDLTKET
VAKSLGRSLVSHEESLSSIKDYFVKTKRVMTPNNEKQALVVEGSDVLLNDHGMAPGMYIEADGKTYIMLPGPPKEMKPMF
ENYAKSHILDRLGVKDQIISRVLRFFAIGESQLETEIEDLLEAQSNPTIAPLAGDGEVTLRLTAKHETEEGALALLKEIE
DKIQERVGEYFYGYDQTTLFSEALKKLGEKNWTLASAESLTGGLFSERMTSISGSGEHMRGSIVTYHDNIKEHVLGVDTD
VLQKHGAISEQCARQMAEKIKEKFNTSVGISFTGVAGPNTAEGHPVGHVFVGLAIEGKETVVHELNLQGTREGIRKRTVN
YGAYYLLKEDSEL

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=774381 PGN40_RS15015 WP_040056632.1 3035686..3036927(-) (cinA) [Priestia filamentosa strain AZC66]
ATGAATGCAGAAATCATTGGTGTAGGATCTGAGCTTTTGCTTGGACAAATCGCAAACACAAACGCCCAATTTTTATCAAA
ACAGCTTGCATCACTAGGTGTAAATGTATATTATCACACAGTTGTAGGAGATAATCCGAAACGTCTAGAAACCGCGATTG
AAGCAGCTAAGGAACGCGCAGATCTTCTTGTTTTTACTGGAGGGTTAGGGCCTACAAAAGACGACTTAACGAAAGAAACT
GTTGCAAAATCACTAGGAAGATCGCTTGTATCACACGAGGAGTCACTCTCTTCTATCAAAGACTATTTTGTAAAAACAAA
GCGAGTGATGACACCGAATAATGAAAAGCAGGCGCTCGTTGTAGAAGGCTCAGATGTGTTATTAAATGATCATGGCATGG
CGCCTGGAATGTATATTGAAGCTGACGGTAAAACGTACATTATGCTTCCAGGACCACCAAAAGAAATGAAGCCAATGTTT
GAAAATTATGCGAAATCTCATATCTTAGACCGCCTTGGTGTGAAAGATCAAATTATTTCTCGGGTGCTGCGCTTTTTTGC
GATTGGAGAATCACAGCTCGAGACGGAAATTGAAGATCTTTTAGAAGCTCAAAGCAATCCAACAATTGCACCGCTTGCAG
GAGATGGGGAAGTTACACTTCGCTTAACAGCTAAGCATGAGACAGAAGAAGGGGCATTAGCTTTACTAAAAGAAATTGAA
GATAAAATTCAAGAGCGCGTTGGCGAATATTTCTATGGATATGACCAAACAACATTGTTTTCTGAAGCACTCAAAAAGCT
TGGTGAAAAGAACTGGACATTAGCAAGTGCTGAAAGCTTAACAGGCGGCTTGTTTAGTGAAAGAATGACAAGTATCTCAG
GTTCTGGTGAGCATATGAGAGGCAGCATTGTCACATATCATGATAATATTAAAGAACATGTTTTAGGTGTGGACACTGAC
GTTCTTCAAAAACATGGCGCAATTAGTGAACAATGTGCGCGCCAAATGGCTGAGAAAATAAAAGAAAAGTTTAATACATC
AGTAGGAATCAGTTTCACAGGAGTTGCAGGTCCAAACACAGCTGAAGGACATCCTGTTGGCCATGTTTTTGTTGGCCTTG
CCATCGAAGGGAAAGAAACGGTTGTTCACGAACTGAACCTTCAAGGAACAAGAGAAGGGATTCGTAAAAGAACCGTCAAC
TATGGAGCATATTACTTATTAAAAGAGGACAGTGAGCTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(259-407)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X7D7E8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.621

98.305

0.576
  cinA Streptococcus pneumoniae TIGR4

44.869

100

0.455
  cinA Streptococcus mitis NCTC 12261

44.869

100

0.455
  cinA Streptococcus pneumoniae R6

44.63

100

0.453
  cinA Streptococcus pneumoniae Rx1

44.63

100

0.453
  cinA Streptococcus pneumoniae D39

44.391

100

0.45
  cinA Streptococcus mitis SK321

44.153

100

0.448
  cinA Streptococcus mutans UA159

43.237

100

0.433
  cinA Streptococcus suis isolate S10

39.609

99.031

0.392