Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OZX66_RS07470 Genome accession   NZ_CP113926
Coordinates   1602282..1603382 (-) Length   366 a.a.
NCBI ID   WP_270333033.1    Uniprot ID   -
Organism   Ligilactobacillus acidipiscis strain ESL0726     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1597282..1608382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX66_RS07460 (OZX66_07460) - 1599343..1600143 (-) 801 WP_056971657.1 TIGR00282 family metallophosphoesterase -
  OZX66_RS07465 (OZX66_07465) rny 1600432..1601997 (-) 1566 WP_338088164.1 ribonuclease Y -
  OZX66_RS07470 (OZX66_07470) recA 1602282..1603382 (-) 1101 WP_270333033.1 recombinase RecA Machinery gene
  OZX66_RS07475 (OZX66_07475) cinA 1603495..1604739 (-) 1245 WP_277121859.1 competence/damage-inducible protein A Machinery gene
  OZX66_RS07480 (OZX66_07480) pgsA 1604928..1605515 (-) 588 WP_079579288.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OZX66_RS07485 (OZX66_07485) - 1605534..1606565 (-) 1032 WP_277121861.1 RodZ domain-containing protein -
  OZX66_RS07490 (OZX66_07490) - 1606655..1607380 (-) 726 WP_277121863.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39416.80 Da        Isoelectric Point: 5.5900

>NTDB_id=763575 OZX66_RS07470 WP_270333033.1 1602282..1603382(-) (recA) [Ligilactobacillus acidipiscis strain ESL0726]
MADERQAALDAALKKIEKNFGKGSIMRMGDKADTQISTIPSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQAQGGTAAYIDAENALDPVYASALGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEIRRAEQIKDGSDIVGNR
VRIKVVKNKVAPPFRKAEVDIMYGEGISKTGELIDMAVEKDIVHKSGSWFSYGEERIGQGRENAKKYMADHPEMMNEVTT
KVRQAYGIADENSDNAKEAGQKDQLDLDLKNDAKETKKESKKAAKK

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=763575 OZX66_RS07470 WP_270333033.1 1602282..1603382(-) (recA) [Ligilactobacillus acidipiscis strain ESL0726]
GTGGCTGATGAAAGACAAGCAGCATTAGACGCTGCATTAAAAAAGATTGAAAAAAATTTCGGTAAAGGTTCAATTATGCG
GATGGGCGATAAGGCCGACACGCAGATCTCGACGATCCCAAGTGGTTCATTGGCTTTAGATGAAGCTTTGGGGGTAGGAG
GTTACCCGCGGGGACGGATCGTTGAGATCTACGGTCCAGAAAGTTCTGGTAAAACAACGGTTGCTTTGCATGCTGTCGCT
GAAGTACAAGCTCAAGGAGGCACGGCTGCCTATATCGATGCCGAGAACGCTTTGGATCCAGTCTATGCGAGTGCTCTAGG
AGTCAACATTGATGAGCTTTTGCTTTCACAGCCCGATACTGGTGAACAGGGCTTGGAAATCGCCGATGCCTTAGTTTCTT
CAGGTGCTGTAGATATAGTTGTTGTTGATTCTGTAGCGGCTTTAGTTCCACGAGCTGAAATAGAAGGTGAAATGGGTGAC
GCGCATGTTGGTTTGCAAGCTCGCCTAATGTCACAAGCTTTAAGGAAGCTTTCAGGTACGATCAATAAAACAAAGACGAT
TGCGCTTTTTATTAATCAGATCCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCTGAAACAACACCAGGCGGACGAGCTT
TGAAATTTTATGCTACGATCCGTTTGGAGATCAGACGTGCCGAACAGATCAAAGACGGTTCTGACATCGTCGGGAATCGC
GTGCGGATCAAGGTCGTTAAAAATAAAGTTGCTCCGCCATTCAGGAAAGCCGAAGTTGACATTATGTATGGCGAAGGTAT
CTCTAAGACCGGAGAGCTGATCGATATGGCTGTTGAAAAAGACATCGTGCATAAAAGCGGTTCGTGGTTCTCATATGGTG
AAGAACGAATCGGTCAAGGGCGTGAAAATGCCAAGAAGTATATGGCTGATCACCCTGAAATGATGAACGAAGTTACAACT
AAAGTTCGTCAAGCATACGGGATCGCCGATGAAAATAGTGACAACGCTAAAGAAGCAGGGCAAAAAGATCAGTTAGATCT
TGATTTAAAAAATGATGCCAAAGAAACAAAAAAAGAATCTAAAAAAGCTGCTAAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

87.5

89.617

0.784
  recA Bacillus subtilis subsp. subtilis str. 168

77.439

89.617

0.694
  recA Streptococcus mitis NCTC 12261

66.944

98.361

0.658
  recA Streptococcus pyogenes NZ131

66.76

97.814

0.653
  recA Streptococcus pneumoniae R6

66.952

95.902

0.642
  recA Streptococcus pneumoniae Rx1

66.952

95.902

0.642
  recA Streptococcus pneumoniae D39

66.952

95.902

0.642
  recA Streptococcus pneumoniae TIGR4

66.952

95.902

0.642
  recA Streptococcus mitis SK321

70.091

90.437

0.634
  recA Streptococcus mutans UA159

65.429

95.628

0.626
  recA Lactococcus lactis subsp. cremoris KW2

67.868

90.984

0.617
  recA Neisseria gonorrhoeae strain FA1090

62.918

89.891

0.566
  recA Neisseria gonorrhoeae MS11

62.918

89.891

0.566
  recA Neisseria gonorrhoeae MS11

62.918

89.891

0.566
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.195

89.617

0.557
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.346

88.525

0.552
  recA Vibrio cholerae strain A1552

62.346

88.525

0.552
  recA Ralstonia pseudosolanacearum GMI1000

64.537

85.519

0.552
  recA Pseudomonas stutzeri DSM 10701

60.06

90.984

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.231

88.798

0.544
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.486

89.891

0.544
  recA Glaesserella parasuis strain SC1401

61.059

87.705

0.536
  recA Helicobacter pylori 26695

58.182

90.164

0.525
  recA Helicobacter pylori strain NCTC11637

58.182

90.164

0.525
  recA Acinetobacter baylyi ADP1

59.259

88.525

0.525
  recA Acinetobacter baumannii D1279779

58.642

88.525

0.519