Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   OZX66_RS07475 Genome accession   NZ_CP113926
Coordinates   1603495..1604739 (-) Length   414 a.a.
NCBI ID   WP_277121859.1    Uniprot ID   -
Organism   Ligilactobacillus acidipiscis strain ESL0726     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 1598495..1609739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX66_RS07460 (OZX66_07460) - 1599343..1600143 (-) 801 WP_056971657.1 TIGR00282 family metallophosphoesterase -
  OZX66_RS07465 (OZX66_07465) rny 1600432..1601997 (-) 1566 WP_338088164.1 ribonuclease Y -
  OZX66_RS07470 (OZX66_07470) recA 1602282..1603382 (-) 1101 WP_270333033.1 recombinase RecA Machinery gene
  OZX66_RS07475 (OZX66_07475) cinA 1603495..1604739 (-) 1245 WP_277121859.1 competence/damage-inducible protein A Machinery gene
  OZX66_RS07480 (OZX66_07480) pgsA 1604928..1605515 (-) 588 WP_079579288.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OZX66_RS07485 (OZX66_07485) - 1605534..1606565 (-) 1032 WP_277121861.1 RodZ domain-containing protein -
  OZX66_RS07490 (OZX66_07490) - 1606655..1607380 (-) 726 WP_277121863.1 SDR family NAD(P)-dependent oxidoreductase -
  OZX66_RS07495 (OZX66_07495) - 1607422..1608729 (-) 1308 WP_277121865.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44882.20 Da        Isoelectric Point: 5.7872

>NTDB_id=763576 OZX66_RS07475 WP_277121859.1 1603495..1604739(-) (cinA) [Ligilactobacillus acidipiscis strain ESL0726]
MHAEVIAVGTEMLLGEITDTNSQVISEGLADLGINVYYHSLVGDNEARMTEVVKLAASRSDLVVISGGLGPTADDLTKQV
VARYLKRDLVVDKAAMQKITAFFKKRKREMTPNNKIQAMYVQGALSLSNEVGLAVGNYYQDSNGADFLLLPGPPHEMQSM
FEKTAKPLLAKQYQGQQVLSSRLLRFFGIGESNLVTKLADLIDEQANPTIAPYAKENEVTLRLTAAGHSDAEDARLLDEL
EEKITDRVGEYLYGYGENNSLPAVVVNKLRQRKLTLSASESLTGGSFQAAVTAIPGASEIFPGGFVTYAAEQKEKLLGIP
ADLIEKNGVVSRKTAIAMAENTRDLLQTDFAVSFTGAAGPDPLEGKPAGTVWIGLAGKNMATQAKLYHFQYDRQRVRNSA
VMTGFGMLNKALDK

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=763576 OZX66_RS07475 WP_277121859.1 1603495..1604739(-) (cinA) [Ligilactobacillus acidipiscis strain ESL0726]
ATGCACGCAGAAGTTATTGCTGTTGGGACCGAAATGCTTTTAGGTGAGATCACTGATACGAATTCTCAAGTTATCAGTGA
AGGACTGGCAGATTTAGGGATCAATGTTTATTATCACAGTTTAGTGGGTGACAATGAGGCCCGGATGACAGAAGTTGTTA
AATTAGCAGCTTCGCGGAGTGATCTTGTCGTCATTTCTGGGGGCCTTGGACCTACCGCAGATGATTTAACTAAACAGGTA
GTTGCTCGCTATTTGAAGCGTGACTTGGTCGTCGATAAAGCGGCCATGCAAAAAATCACGGCTTTTTTTAAAAAAAGAAA
ACGTGAGATGACACCAAATAACAAGATACAGGCGATGTATGTCCAAGGAGCTCTTTCGCTGTCAAATGAGGTCGGGTTGG
CCGTTGGTAATTATTATCAAGATTCAAATGGTGCCGATTTCTTATTACTGCCAGGTCCGCCTCATGAGATGCAGTCGATG
TTTGAAAAAACGGCCAAACCCTTGCTGGCCAAACAGTATCAAGGACAGCAAGTGTTGAGCTCACGACTGCTGCGGTTTTT
TGGCATTGGCGAGTCCAACTTAGTTACTAAGCTGGCAGATCTGATCGATGAACAGGCCAATCCAACGATCGCACCTTATG
CCAAGGAAAATGAAGTGACCTTGCGTTTGACCGCTGCTGGGCATTCAGATGCTGAAGATGCAAGGTTGTTGGATGAATTA
GAAGAAAAGATCACTGATCGTGTGGGTGAATATCTTTATGGTTATGGTGAAAACAACAGTTTGCCAGCAGTAGTCGTCAA
TAAACTACGGCAACGCAAATTGACCTTATCTGCATCTGAAAGTTTGACAGGCGGGAGTTTTCAAGCTGCTGTCACGGCGA
TCCCAGGTGCATCTGAGATTTTTCCAGGTGGCTTTGTGACTTATGCTGCTGAACAAAAAGAAAAATTACTGGGGATACCT
GCTGATTTGATTGAAAAAAATGGTGTTGTCAGTCGAAAAACAGCGATCGCGATGGCTGAAAATACTCGCGATCTGCTTCA
GACGGATTTTGCTGTTTCATTTACTGGTGCGGCTGGTCCTGATCCGTTGGAAGGCAAACCTGCCGGGACAGTTTGGATCG
GTTTAGCTGGCAAAAATATGGCAACCCAGGCAAAGCTTTATCATTTCCAGTATGATCGGCAACGGGTCCGCAACAGTGCA
GTTATGACTGGTTTTGGAATGTTGAATAAGGCATTGGATAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(259-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

50.843

100

0.51
  cinA Streptococcus mitis SK321

49.762

100

0.505
  cinA Streptococcus mitis NCTC 12261

49.524

100

0.502
  cinA Streptococcus pneumoniae TIGR4

49.286

100

0.5
  cinA Streptococcus pneumoniae Rx1

49.048

100

0.498
  cinA Streptococcus pneumoniae R6

49.048

100

0.498
  cinA Streptococcus pneumoniae D39

48.81

100

0.495
  cinA Bacillus subtilis subsp. subtilis str. 168

44.175

99.517

0.44
  cinA Streptococcus suis isolate S10

43.392

96.86

0.42