Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OU989_RS05125 Genome accession   NZ_CP113527
Coordinates   1084168..1085229 (+) Length   353 a.a.
NCBI ID   WP_274796044.1    Uniprot ID   A0AAJ5UW92
Organism   Lysinibacillus irui strain IRB4-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1079168..1090229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU989_RS05100 (OU989_05105) - 1079899..1080156 (+) 258 WP_004224939.1 DUF3243 domain-containing protein -
  OU989_RS05105 (OU989_05110) - 1080374..1081159 (+) 786 WP_274797280.1 DUF3388 domain-containing protein -
  OU989_RS05110 (OU989_05115) - 1081176..1082105 (+) 930 WP_274796040.1 RodZ family helix-turn-helix domain-containing protein -
  OU989_RS05115 (OU989_05120) pgsA 1082153..1082731 (+) 579 WP_274796041.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OU989_RS05120 (OU989_05125) cinA 1082749..1084011 (+) 1263 WP_274796042.1 competence/damage-inducible protein A Machinery gene
  OU989_RS05125 (OU989_05130) recA 1084168..1085229 (+) 1062 WP_274796044.1 recombinase RecA Machinery gene
  OU989_RS05130 (OU989_05135) rny 1085785..1087344 (+) 1560 WP_274796045.1 ribonuclease Y -
  OU989_RS05135 (OU989_05140) - 1087464..1088246 (+) 783 WP_274796046.1 tyrosine-protein phosphatase -
  OU989_RS05140 (OU989_05145) - 1088500..1089435 (+) 936 WP_274796047.1 O-antigen ligase -
  OU989_RS05145 (OU989_05150) - 1089502..1090215 (+) 714 WP_274796048.1 YveK family protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38020.23 Da        Isoelectric Point: 4.6879

>NTDB_id=762773 OU989_RS05125 WP_274796044.1 1084168..1085229(+) (recA) [Lysinibacillus irui strain IRB4-01]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPVYAQKLGVDIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENVAVMEDIANK
IRASYGIAASSYTIAAHDEEEMDEELMLLLEEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=762773 OU989_RS05125 WP_274796044.1 1084168..1085229(+) (recA) [Lysinibacillus irui strain IRB4-01]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCTCTAAAGCAAATTGAAAAGAATTTTGGTAAAGGTTCTATCATGAAACT
CGGCGAAAAAACCGATTTAGAAATTGCGACATCTTCAAGTGGTTCGTTAGCACTTGATGCAGCATTAGGAGTAGGCGGAT
ATCCACGTGGACGTATTATTGAAGTATACGGCCCAGAATCATCTGGTAAAACAACAGTTGCGCTTCATGCCATTGCGGAA
GTTCAAGCAAAAGGTGGACAAGCTGCATTTATCGATGCAGAGCATGCATTAGATCCAGTTTATGCGCAAAAATTAGGCGT
CGATATTGACGAGCTATTACTTTCACAGCCAGACACAGGGGAGCAAGCACTTGAAATTGCAGAAGCATTAGTGCGTAGTG
GTGCTATTGATATTATCGTTATTGACTCCGTTGCTGCCTTAGTACCAAAAGCTGAAATTGAAGGGGATATGGGTGATTCT
CATGTCGGCCTACAAGCACGTTTAATGTCTCAGGCATTACGTAAACTTTCAGGTGCGATTAATAAATCAAAAACGATTGC
TATTTTCATTAACCAAGTTCGTGAAAAAATTGGTGTCATGTTCGGAAACCCTGAAACAACACCAGGTGGACGAGCTCTTA
AATTCTATAGCTCTGTCCGTTTAGAAGTGCGTCGAGCAGAAGCTATTAAACAAGGTAATGATATTGTTGGTAACCGTACA
AAAATTAAAATTGTTAAAAATAAAGTAGCGCCGCCTTTCCGTACTGCTGAAGTGGATATTATGTATGGTGAAGGTATTTC
TAAAGAAGGCGAAACAGTTGATTTAGGTGTAGAATTAGATATTGTCCAAAAAAGTGGTTCTTGGTATGCATATGGTGATG
AACGTCTAGGTCAAGGTCGAGAAAATGCTAAACAATATTTAAAAGAAAATGTTGCTGTTATGGAAGACATCGCAAATAAA
ATTCGAGCTTCTTATGGTATTGCAGCTTCTTCTTACACAATTGCTGCTCATGATGAAGAAGAGATGGATGAAGAATTGAT
GTTACTTCTTGAAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.544

92.635

0.802
  recA Latilactobacillus sakei subsp. sakei 23K

75.153

92.351

0.694
  recA Streptococcus mitis SK321

63.989

100

0.654
  recA Streptococcus mitis NCTC 12261

63.712

100

0.652
  recA Streptococcus mutans UA159

64.47

98.867

0.637
  recA Streptococcus pneumoniae R6

67.273

93.484

0.629
  recA Streptococcus pneumoniae Rx1

67.273

93.484

0.629
  recA Streptococcus pneumoniae D39

67.273

93.484

0.629
  recA Streptococcus pneumoniae TIGR4

67.273

93.484

0.629
  recA Lactococcus lactis subsp. cremoris KW2

66.364

93.484

0.62
  recA Streptococcus pyogenes NZ131

66.768

92.918

0.62
  recA Neisseria gonorrhoeae strain FA1090

65.35

93.201

0.609
  recA Neisseria gonorrhoeae MS11

65.35

93.201

0.609
  recA Neisseria gonorrhoeae MS11

65.35

93.201

0.609
  recA Acinetobacter baylyi ADP1

61.494

98.584

0.606
  recA Acinetobacter baumannii D1279779

60.745

98.867

0.601
  recA Helicobacter pylori strain NCTC11637

64.615

92.068

0.595
  recA Helicobacter pylori 26695

64.308

92.068

0.592
  recA Ralstonia pseudosolanacearum GMI1000

63.609

92.635

0.589
  recA Glaesserella parasuis strain SC1401

59.71

97.734

0.584
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.883

92.351

0.581
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.883

92.351

0.581
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.438

90.652

0.575
  recA Vibrio cholerae strain A1552

63.438

90.652

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

91.501

0.575
  recA Pseudomonas stutzeri DSM 10701

62.305

90.935

0.567