Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   OU989_RS05120 Genome accession   NZ_CP113527
Coordinates   1082749..1084011 (+) Length   420 a.a.
NCBI ID   WP_274796042.1    Uniprot ID   A0AAJ5USF3
Organism   Lysinibacillus irui strain IRB4-01     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1077749..1089011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU989_RS05090 (OU989_05095) yfmH 1077828..1079129 (+) 1302 WP_274796038.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  OU989_RS05095 (OU989_05100) ymfI 1079126..1079854 (+) 729 WP_274796039.1 elongation factor P 5-aminopentanone reductase -
  OU989_RS05100 (OU989_05105) - 1079899..1080156 (+) 258 WP_004224939.1 DUF3243 domain-containing protein -
  OU989_RS05105 (OU989_05110) - 1080374..1081159 (+) 786 WP_274797280.1 DUF3388 domain-containing protein -
  OU989_RS05110 (OU989_05115) - 1081176..1082105 (+) 930 WP_274796040.1 RodZ family helix-turn-helix domain-containing protein -
  OU989_RS05115 (OU989_05120) pgsA 1082153..1082731 (+) 579 WP_274796041.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OU989_RS05120 (OU989_05125) cinA 1082749..1084011 (+) 1263 WP_274796042.1 competence/damage-inducible protein A Machinery gene
  OU989_RS05125 (OU989_05130) recA 1084168..1085229 (+) 1062 WP_274796044.1 recombinase RecA Machinery gene
  OU989_RS05130 (OU989_05135) rny 1085785..1087344 (+) 1560 WP_274796045.1 ribonuclease Y -
  OU989_RS05135 (OU989_05140) - 1087464..1088246 (+) 783 WP_274796046.1 tyrosine-protein phosphatase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45415.84 Da        Isoelectric Point: 4.8383

>NTDB_id=762772 OU989_RS05120 WP_274796042.1 1082749..1084011(+) (cinA) [Lysinibacillus irui strain IRB4-01]
MNAEILAVGSELLLGQITNTNARFISSQLSELGINVFYHTVVGDNAQRLEQAIEVAESRADLIIFSGGLGPTKDDLTKET
IARHLGVSLEFDEVALTYIEQFFAKRGRPMTENNRKQALILAGSEVLANHHGMAPGMILTKNDRTYILLPGPPKELEPMF
QFEAKPKLAAMLNDGGIIASHVMRFYGIGEAELEVRVQSILDAQTNPTVAPLASDGEVTLRVTAKAATEQQAQQLIAAKV
AEIQALVGEYQYGVDDDSLASKTVEMLLDNKLTIAAAESLTAGLFQSELAEIPGVGNALIGGIVTYAADAKVKQLGISQE
LIDTHGVVSSECAAAMASAVREKFSTNIGIGLTGEAGPTAHDHQPVGTVWIGIAIEDEEPLTYLLHLSGMRNTNRLRAVK
FTCHYLMQLLEERGYTKRYR

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=762772 OU989_RS05120 WP_274796042.1 1082749..1084011(+) (cinA) [Lysinibacillus irui strain IRB4-01]
ATGAATGCTGAAATTCTTGCTGTTGGCTCTGAGTTATTATTAGGTCAAATTACGAATACAAATGCGAGATTTATCTCAAG
TCAGTTATCAGAGCTTGGTATAAACGTTTTTTATCACACAGTAGTTGGAGATAATGCGCAACGGTTAGAACAAGCTATTG
AAGTGGCGGAGTCTCGTGCTGATCTCATTATTTTTTCGGGAGGGCTTGGACCTACGAAGGATGATTTAACGAAGGAAACG
ATTGCACGTCACCTCGGTGTTTCTCTTGAATTTGACGAAGTGGCATTAACGTATATTGAGCAATTTTTTGCCAAACGAGG
ACGTCCAATGACGGAGAATAATCGTAAACAGGCATTAATTTTAGCTGGTAGTGAAGTGCTAGCCAATCACCATGGCATGG
CTCCTGGTATGATTTTAACAAAGAATGATCGTACCTATATTTTACTTCCAGGACCTCCAAAAGAGCTAGAACCAATGTTT
CAATTTGAGGCCAAACCTAAGCTAGCAGCGATGCTGAATGATGGAGGGATCATTGCATCTCATGTCATGCGTTTTTATGG
CATTGGTGAGGCCGAGCTCGAAGTACGTGTTCAAAGTATATTAGATGCACAAACAAATCCAACGGTTGCTCCACTTGCTT
CTGATGGAGAGGTAACATTGCGCGTGACAGCTAAAGCAGCAACAGAGCAACAAGCTCAACAGTTAATTGCTGCAAAAGTT
GCAGAGATACAGGCACTAGTTGGAGAGTATCAATATGGTGTAGATGATGATTCACTTGCATCTAAAACAGTTGAAATGTT
ACTTGATAATAAGCTAACAATTGCAGCTGCAGAAAGTTTAACAGCTGGGTTATTTCAATCTGAACTTGCTGAAATTCCCG
GAGTAGGCAATGCACTTATCGGAGGCATTGTTACGTATGCAGCAGATGCGAAAGTAAAACAGCTTGGTATTTCACAAGAA
TTAATTGATACACATGGTGTTGTCAGCAGCGAGTGTGCAGCGGCAATGGCGAGTGCTGTACGTGAAAAGTTTTCAACGAA
TATTGGCATTGGTCTTACGGGCGAAGCAGGCCCTACTGCGCATGATCACCAACCTGTAGGTACGGTTTGGATAGGTATTG
CCATTGAGGATGAGGAGCCACTTACATATTTACTTCATTTATCTGGTATGCGCAATACGAATCGACTTCGTGCAGTGAAA
TTTACATGCCATTATTTAATGCAGTTATTAGAAGAGCGTGGATATACAAAACGATATAGATAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.699

98.095

0.507
  cinA Streptococcus mitis SK321

45.103

92.381

0.417
  cinA Streptococcus pneumoniae Rx1

44.909

91.19

0.41
  cinA Streptococcus pneumoniae TIGR4

44.909

91.19

0.41
  cinA Streptococcus pneumoniae R6

44.909

91.19

0.41
  cinA Streptococcus mitis NCTC 12261

44.33

92.381

0.41
  cinA Streptococcus pneumoniae D39

44.648

91.19

0.407
  cinA Streptococcus mutans UA159

43.799

90.238

0.395