Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   OQG81_RS01225 Genome accession   NZ_CP113440
Coordinates   196027..197181 (+) Length   384 a.a.
NCBI ID   WP_265644044.1    Uniprot ID   A0AA47FF49
Organism   Streptococcus macedonicus strain E37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 191027..202181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQG81_RS01185 (OQG81_01185) ruvA 191161..191754 (+) 594 WP_014295457.1 Holliday junction branch migration protein RuvA -
  OQG81_RS01190 (OQG81_01190) - 191859..192515 (-) 657 WP_014295456.1 transcriptional regulator -
  OQG81_RS01195 (OQG81_01195) - 192776..192919 (+) 144 WP_014295455.1 hypothetical protein -
  OQG81_RS01200 (OQG81_01200) - 192938..193240 (+) 303 WP_014295454.1 hypothetical protein -
  OQG81_RS01205 (OQG81_01205) - 193622..193885 (+) 264 WP_223246337.1 hypothetical protein -
  OQG81_RS01210 (OQG81_01210) - 193954..194184 (+) 231 WP_014295452.1 hypothetical protein -
  OQG81_RS01215 (OQG81_01215) - 194123..194560 (+) 438 WP_014295451.1 hypothetical protein -
  OQG81_RS01220 (OQG81_01220) cinA 194718..195977 (+) 1260 WP_014295450.1 competence/damage-inducible protein A Machinery gene
  OQG81_RS01225 (OQG81_01225) recA 196027..197181 (+) 1155 WP_265644044.1 recombinase RecA Machinery gene
  OQG81_RS01230 (OQG81_01230) spx 197450..197848 (+) 399 WP_009855164.1 transcriptional regulator Spx -
  OQG81_RS01235 (OQG81_01235) - 198170..198439 (+) 270 WP_003066890.1 IreB family regulatory phosphoprotein -
  OQG81_RS01240 (OQG81_01240) ruvX 198436..198855 (+) 420 WP_006531414.1 Holliday junction resolvase RuvX -
  OQG81_RS01245 (OQG81_01245) - 198888..199205 (+) 318 WP_006531413.1 DUF1292 domain-containing protein -
  OQG81_RS01250 (OQG81_01250) - 199469..201058 (+) 1590 WP_265644043.1 DUF2079 domain-containing protein -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 41206.78 Da        Isoelectric Point: 4.8577

>NTDB_id=762274 OQG81_RS01225 WP_265644044.1 196027..197181(+) (recA) [Streptococcus macedonicus strain E37]
MAKKTKKTEAITKKFGDERKKALDDALKLIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGSGDQKDSNVGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELVKIASDLDIIKKAGAWFSYNGEKIGQGSE
NAKKYLAEHPEVFDEIDHKVRVHYGLVEETEDEKAADIVEESAATNDNVDEVVLDLDDAIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=762274 OQG81_RS01225 WP_265644044.1 196027..197181(+) (recA) [Streptococcus macedonicus strain E37]
TTGGCTAAGAAGACAAAGAAAACAGAAGCTATCACTAAAAAATTTGGTGATGAGCGTAAAAAGGCGCTTGATGATGCCTT
GAAATTAATTGAAAAAGATTTCGGTAAGGGAGCTGTTATGCGCCTTGGTGAACGTGCTGAACAAAAAGTTCAAGTCATGA
GTTCAGGTAGCTTGGCTCTTGATATTGCTTTAGGTGCAGGTGGTTATCCTAAAGGGCGTATCATTGAAATCTATGGACCT
GAAAGTTCTGGTAAGACAACTGTTGCGCTTCATGCGGTAGCACAAGCTCAAAAAGAAGGTGGAATTGCTGCCTTTATCGA
TGCCGAACACGCACTTGATCCAGCTTATGCTGCGGCTCTTGGTGTTAACATTGATGAGCTTCTCTTGTCACAACCTGACT
CTGGGGAACAAGGTCTTGAAATTGCAGGAAAATTGATTGACTCAGGTGCTGTTGACCTCGTCGTTGTCGATTCTGTTGCT
GCCCTTGTACCTCGTGCCGAAATCGATGGTGACATTGGTGATAGTCACGTTGGTTTGCAAGCTCGTATGATGAGTCAAGC
AATGCGTAAATTGTCAGCTTCAATCAACAAAACAAAAACAATTGCGATTTTCATCAACCAGTTGCGTGAAAAAGTTGGTG
TGATGTTTGGTAACCCAGAAACAACACCTGGTGGACGCGCGCTTAAGTTCTATGCGTCAGTTCGTCTTGATGTCCGTGGT
AACACACAAATCAAAGGTTCTGGTGACCAAAAAGATAGTAATGTTGGTAAAGAAACTAAAATCAAAGTGGTTAAAAACAA
AGTTGCGCCACCATTTAAAACAGCCGAAGTTGAAATTATGTATGGTGAGGGAATTTCACGTACGGGTGAGCTTGTTAAGA
TTGCTAGCGACTTAGACATCATCAAAAAAGCAGGTGCTTGGTTCTCGTATAACGGTGAGAAAATCGGACAAGGTTCTGAA
AATGCGAAGAAATACTTGGCAGAACACCCAGAAGTCTTTGATGAAATCGACCACAAAGTACGTGTTCACTACGGTCTCGT
AGAAGAAACCGAAGATGAGAAAGCAGCAGATATTGTTGAAGAATCAGCAGCAACTAATGATAATGTTGACGAGGTTGTTC
TTGATTTAGATGATGCTATCGAAATCGAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

89.062

100

0.891

  recA Streptococcus mutans UA159

87.306

100

0.878

  recA Streptococcus pneumoniae R6

85.825

100

0.867

  recA Streptococcus pneumoniae Rx1

85.825

100

0.867

  recA Streptococcus pneumoniae D39

85.825

100

0.867

  recA Streptococcus pneumoniae TIGR4

85.825

100

0.867

  recA Streptococcus mitis NCTC 12261

86.719

100

0.867

  recA Streptococcus mitis SK321

86.719

100

0.867

  recA Lactococcus lactis subsp. cremoris KW2

79.143

91.146

0.721

  recA Latilactobacillus sakei subsp. sakei 23K

66.301

95.052

0.63

  recA Bacillus subtilis subsp. subtilis str. 168

68.997

85.677

0.591

  recA Acinetobacter baumannii D1279779

60.057

91.927

0.552

  recA Neisseria gonorrhoeae strain FA1090

60.286

91.146

0.549

  recA Neisseria gonorrhoeae MS11

60.286

91.146

0.549

  recA Neisseria gonorrhoeae MS11

60.286

91.146

0.549

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.062

88.281

0.539

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.777

84.115

0.536

  recA Glaesserella parasuis strain SC1401

60.588

88.542

0.536

  recA Vibrio cholerae strain A1552

57.91

92.188

0.534

  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.91

92.188

0.534

  recA Acinetobacter baylyi ADP1

60

88.542

0.531

  recA Pseudomonas stutzeri DSM 10701

57.349

90.365

0.518

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.912

86.198

0.508

  recA Helicobacter pylori 26695

57.784

86.979

0.503

  recA Helicobacter pylori strain NCTC11637

57.784

86.979

0.503

  recA Ralstonia pseudosolanacearum GMI1000

59.937

82.552

0.495