Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   QL281_RS12500 Genome accession   NZ_CP125292
Coordinates   2323461..2323691 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain SRCM117797     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2318461..2328691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS12470 (QL281_12470) ridA 2318625..2319002 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  QL281_RS12475 (QL281_12475) spoVG 2319197..2319490 (+) 294 WP_003218346.1 septation regulator SpoVG -
  QL281_RS12480 (QL281_12480) glmU 2319683..2321053 (+) 1371 WP_017696375.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  QL281_RS12485 (QL281_12485) prs 2321076..2322029 (+) 954 WP_069837180.1 ribose-phosphate diphosphokinase -
  QL281_RS12490 (QL281_12490) ctc 2322114..2322728 (+) 615 WP_069963938.1 50S ribosomal protein L25/general stress protein Ctc -
  QL281_RS12495 (QL281_12495) pth 2322835..2323401 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  QL281_RS12500 (QL281_12500) subA/fin 2323461..2323691 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  QL281_RS12505 (QL281_12505) mfd 2323761..2327294 (+) 3534 WP_003243453.1 transcription-repair coupling factor -
  QL281_RS12510 (QL281_12510) spoVT 2327430..2327966 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=762273 QL281_RS12500 WP_003243417.1 2323461..2323691(+) (subA/fin) [Bacillus subtilis strain SRCM117797]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=762273 QL281_RS12500 WP_003243417.1 2323461..2323691(+) (subA/fin) [Bacillus subtilis strain SRCM117797]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1