Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OPU65_RS04875 Genome accession   NZ_CP110812
Coordinates   936410..937456 (-) Length   348 a.a.
NCBI ID   WP_043926427.1    Uniprot ID   A0AA90F4G0
Organism   Bacillus paralicheniformis strain CamBx3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 931410..942456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS04855 (OPU65_04855) - 932137..933057 (-) 921 WP_265627037.1 dipeptidase -
  OPU65_RS04860 (OPU65_04860) spoVS 933163..933423 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  OPU65_RS04865 (OPU65_04865) - 933625..934422 (-) 798 WP_265627038.1 TIGR00282 family metallophosphoesterase -
  OPU65_RS04870 (OPU65_04870) rny 934509..936068 (-) 1560 WP_020451457.1 ribonuclease Y -
  OPU65_RS04875 (OPU65_04875) recA 936410..937456 (-) 1047 WP_043926427.1 recombinase RecA Machinery gene
  OPU65_RS04880 (OPU65_04880) cinA 937625..938875 (-) 1251 WP_265627039.1 competence/damage-inducible protein A Machinery gene
  OPU65_RS04885 (OPU65_04885) pgsA 938895..939476 (-) 582 WP_003181921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OPU65_RS04890 (OPU65_04890) - 939543..940445 (-) 903 WP_301441296.1 RodZ domain-containing protein -
  OPU65_RS04895 (OPU65_04895) - 940463..941254 (-) 792 WP_003181917.1 YmfK family protein -
  OPU65_RS04900 (OPU65_04900) - 941502..941759 (-) 258 WP_075752761.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37779.90 Da        Isoelectric Point: 4.7097

>NTDB_id=756344 OPU65_RS04875 WP_043926427.1 936410..937456(-) (recA) [Bacillus paralicheniformis strain CamBx3]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTETRISTVPSGSLALDTALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVDIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLDTGGVAPAQEDDAQAQEELEF

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=756344 OPU65_RS04875 WP_043926427.1 936410..937456(-) (recA) [Bacillus paralicheniformis strain CamBx3]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCGCTTAAACAAATAGAAAAGCAGTTTGGTAAAGGTTCGATTATGAAACT
CGGCGAACAAACTGAAACGAGAATTTCAACAGTTCCGAGCGGTTCTTTAGCGCTCGACACGGCTCTTGGAGTGGGCGGAT
ACCCGCGCGGCCGGATTATTGAAGTATACGGGCCTGAAAGCTCCGGTAAAACGACGGTGGCGCTTCATGCGATTGCCGAA
GTTCAGCAGCAGGGCGGACAGGCGGCGTTCATCGACGCCGAACACGCGCTCGACCCCGTCTATGCACAAAAGCTGGGCGT
CGACATTGATGAGCTTTTGCTGTCACAGCCTGATACGGGCGAGCAGGCACTCGAAATCGCCGAAGCTCTTGTCAGAAGCG
GAGCGGTGGATATCGTTGTCATCGACTCAGTAGCAGCGCTTGTGCCGAAAGCTGAAATCGAAGGAGACATGGGGGATTCC
CACGTTGGTTTGCAGGCCAGACTGATGTCTCAGGCGCTTCGTAAGCTTTCCGGAGCAATCAATAAATCAAAGACCATCGC
GATCTTTATTAACCAGATTCGTGAAAAAGTCGGTGTCATGTTTGGAAATCCTGAGACGACACCAGGCGGAAGAGCGCTGA
AATTCTACTCTTCTGTCCGCCTTGAAGTGCGCCGCGCAGAGCAGCTGAAACAAGGCAACGATGTCATGGGGAACAAGACG
AAAATCAAAGTCGTGAAAAACAAAGTGGCACCTCCGTTCCGGACGGCCGAAGTGGACATTATGTACGGGGAAGGGATTTC
AAAAGAAGGGGAAATCATCGACCTCGGAACAGAGCTTGACATCGTTCAGAAGAGCGGTGCATGGTACTCTTATCAGGAGG
AACGTCTTGGACAAGGCCGTGAAAACGCCAAACAGTTCCTGAAAGAAAACAAGGACATCCTTTTGATGATTCAAGAGCAG
ATCCGGGAGCACTACGGTTTGGACACCGGGGGCGTTGCTCCTGCGCAGGAAGATGATGCCCAAGCTCAGGAAGAACTCGA
ATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.687

95.402

0.922
  recA Latilactobacillus sakei subsp. sakei 23K

74.462

93.391

0.695
  recA Streptococcus mitis NCTC 12261

67.442

98.851

0.667
  recA Streptococcus mitis SK321

67.052

99.425

0.667
  recA Streptococcus pneumoniae D39

68.769

95.69

0.658
  recA Streptococcus pneumoniae Rx1

68.769

95.69

0.658
  recA Streptococcus pneumoniae R6

68.769

95.69

0.658
  recA Streptococcus pneumoniae TIGR4

68.769

95.69

0.658
  recA Streptococcus mutans UA159

68.693

94.54

0.649
  recA Streptococcus pyogenes NZ131

67.988

94.253

0.641
  recA Lactococcus lactis subsp. cremoris KW2

66.364

94.828

0.629
  recA Neisseria gonorrhoeae strain FA1090

65.749

93.966

0.618
  recA Neisseria gonorrhoeae MS11

65.749

93.966

0.618
  recA Neisseria gonorrhoeae MS11

65.749

93.966

0.618
  recA Ralstonia pseudosolanacearum GMI1000

66.049

93.103

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.426

97.126

0.606
  recA Helicobacter pylori 26695

64.923

93.391

0.606
  recA Helicobacter pylori strain NCTC11637

64.923

93.391

0.606
  recA Acinetobacter baumannii D1279779

61.721

96.839

0.598
  recA Glaesserella parasuis strain SC1401

59.884

98.851

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.997

93.966

0.592
  recA Pseudomonas stutzeri DSM 10701

59.942

98.276

0.589
  recA Vibrio cholerae strain A1552

63.863

92.241

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

92.241

0.589
  recA Acinetobacter baylyi ADP1

63.043

92.529

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.372

92.816

0.56