Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   OPU65_RS04880 Genome accession   NZ_CP110812
Coordinates   937625..938875 (-) Length   416 a.a.
NCBI ID   WP_265627039.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 932625..943875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS04860 (OPU65_04860) spoVS 933163..933423 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  OPU65_RS04865 (OPU65_04865) - 933625..934422 (-) 798 WP_265627038.1 TIGR00282 family metallophosphoesterase -
  OPU65_RS04870 (OPU65_04870) rny 934509..936068 (-) 1560 WP_020451457.1 ribonuclease Y -
  OPU65_RS04875 (OPU65_04875) recA 936410..937456 (-) 1047 WP_043926427.1 recombinase RecA Machinery gene
  OPU65_RS04880 (OPU65_04880) cinA 937625..938875 (-) 1251 WP_265627039.1 competence/damage-inducible protein A Machinery gene
  OPU65_RS04885 (OPU65_04885) pgsA 938895..939476 (-) 582 WP_003181921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OPU65_RS04890 (OPU65_04890) - 939543..940445 (-) 903 WP_301441296.1 RodZ domain-containing protein -
  OPU65_RS04895 (OPU65_04895) - 940463..941254 (-) 792 WP_003181917.1 YmfK family protein -
  OPU65_RS04900 (OPU65_04900) - 941502..941759 (-) 258 WP_075752761.1 DUF3243 domain-containing protein -
  OPU65_RS04905 (OPU65_04905) ymfI 941830..942561 (-) 732 WP_075752763.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45556.85 Da        Isoelectric Point: 4.9155

>NTDB_id=756345 OPU65_RS04880 WP_265627039.1 937625..938875(-) (cinA) [Bacillus paralicheniformis strain CamBx3]
MKLERKAEIIAVGSELLLGQIANTNAQFISRHLAEIGINVFYHTAVGDNPERLKQVIQTAQQRSDFIIFSGGLGPTKDDL
TKETIAEVVGRPLQLDDEAFESIQDYFKKTNREMSPNNRKQALILEGSDVLPNRFGMAPGMLLEHESRFYMLLPGPPKEL
EPMFENEAKPLLLEKLGSKEKIVSRVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHADPAETNRLL
KETEDLILERVGEFFYGYDDTSLAEELAKACRSKGMTLAAAESFTGGLFSTWLTEMSGASEYFKGGAVCYTNELKVSAAG
VAEDTLQRYGAVSAQCAKELAAGIRVKTGSDIGISFTGVAGPNTQEGHPAGKVFIGISVKDQAEEAFEFQFAGSRSAVRK
RSAKYGCHLLLKMMEK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=756345 OPU65_RS04880 WP_265627039.1 937625..938875(-) (cinA) [Bacillus paralicheniformis strain CamBx3]
ATGAAGTTGGAAAGAAAAGCGGAAATTATCGCTGTCGGTTCTGAGCTTCTGCTCGGACAAATCGCTAATACAAATGCTCA
GTTTATCAGCAGGCATTTAGCCGAAATCGGCATTAACGTCTTTTATCACACGGCGGTGGGAGACAACCCGGAACGCCTTA
AACAAGTGATTCAGACAGCACAGCAAAGGTCTGACTTCATCATTTTTTCGGGAGGCCTCGGACCGACGAAAGATGATTTG
ACAAAAGAAACGATCGCTGAAGTTGTCGGGCGCCCTCTTCAGCTCGACGATGAAGCCTTCGAATCGATTCAGGATTACTT
CAAAAAAACGAACCGGGAGATGTCGCCGAACAACCGCAAACAGGCGCTGATCCTCGAAGGATCCGATGTTCTGCCGAACC
GCTTCGGGATGGCGCCGGGAATGCTGCTTGAGCATGAATCGCGCTTTTATATGCTCCTGCCGGGACCTCCGAAAGAGCTG
GAGCCGATGTTTGAAAACGAAGCGAAACCGCTGCTTTTGGAAAAGCTCGGCTCGAAGGAAAAGATCGTGTCAAGGGTACT
GCGGTTCTTCGGCATCGGAGAATCCCAGCTTGAAACCGATTTGGAAGATCTCATCGATGCGCAGACTAATCCGACAATCG
CTCCGCTTGCGGCAGACGGGGAAGTCACGCTCAGGCTCACGGCAAAGCATGCGGATCCGGCGGAGACAAACCGCTTGTTA
AAAGAAACGGAAGACCTCATCCTGGAGCGGGTCGGAGAGTTCTTTTACGGATATGATGATACATCTCTTGCAGAAGAGCT
TGCGAAAGCATGCAGGAGCAAGGGAATGACCCTGGCCGCTGCGGAAAGCTTTACAGGCGGGCTTTTTTCCACCTGGCTGA
CGGAAATGAGCGGCGCTTCGGAATATTTTAAAGGCGGCGCCGTCTGCTACACAAACGAATTGAAAGTGTCAGCGGCCGGC
GTTGCCGAAGACACGCTGCAGCGCTACGGTGCGGTCAGCGCGCAATGCGCAAAAGAGCTCGCCGCAGGCATCAGAGTCAA
AACAGGAAGCGATATCGGCATCAGCTTTACTGGAGTAGCCGGGCCGAATACGCAAGAAGGCCATCCGGCAGGAAAGGTGT
TTATCGGCATCTCCGTGAAGGACCAGGCCGAAGAAGCGTTCGAATTTCAGTTCGCCGGATCGAGGTCTGCGGTGCGAAAG
CGTTCTGCCAAATACGGCTGCCATCTGTTGCTGAAAATGATGGAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

76.923

100

0.769
  cinA Streptococcus pneumoniae TIGR4

47.494

100

0.478
  cinA Streptococcus mitis SK321

47.017

100

0.474
  cinA Streptococcus pneumoniae R6

47.017

100

0.474
  cinA Streptococcus pneumoniae Rx1

47.017

100

0.474
  cinA Streptococcus mitis NCTC 12261

47.017

100

0.474
  cinA Streptococcus pneumoniae D39

46.778

100

0.471
  cinA Streptococcus mutans UA159

46.829

98.558

0.462
  cinA Streptococcus suis isolate S10

41.162

95.192

0.392