Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | OP858_RS07445 | Genome accession | NZ_CP110784 |
| Coordinates | 1511498..1512550 (-) | Length | 350 a.a. |
| NCBI ID | WP_002437037.1 | Uniprot ID | A0A4Q9WJI9 |
| Organism | Staphylococcus capitis strain CCSM0123 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1509935..1584108 | 1511498..1512550 | within | 0 |
Gene organization within MGE regions
Location: 1509935..1584108
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OP858_RS07445 (OP858_07445) | recA | 1511498..1512550 (-) | 1053 | WP_002437037.1 | recombinase RecA | Machinery gene |
| OP858_RS07450 (OP858_07450) | - | 1512719..1513867 (-) | 1149 | WP_267263380.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| OP858_RS07455 (OP858_07455) | pgsA | 1514009..1514590 (-) | 582 | WP_002453113.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| OP858_RS07460 (OP858_07460) | - | 1514618..1515010 (-) | 393 | WP_016898116.1 | helix-turn-helix domain-containing protein | - |
| OP858_RS07465 (OP858_07465) | - | 1515029..1515856 (-) | 828 | WP_016898115.1 | YmfK family protein | - |
| OP858_RS07470 (OP858_07470) | ymfI | 1516038..1516745 (-) | 708 | WP_002453110.1 | elongation factor P 5-aminopentanone reductase | - |
| OP858_RS07475 (OP858_07475) | yfmH | 1516745..1518031 (-) | 1287 | WP_002453109.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| OP858_RS07480 (OP858_07480) | yfmF | 1518031..1519305 (-) | 1275 | WP_267263381.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| OP858_RS07485 (OP858_07485) | - | 1519346..1520056 (-) | 711 | WP_267263382.1 | GntR family transcriptional regulator | - |
| OP858_RS07490 (OP858_07490) | - | 1520059..1522479 (-) | 2421 | WP_002453106.1 | DNA translocase FtsK | - |
| OP858_RS07495 (OP858_07495) | rnjB | 1522728..1524401 (-) | 1674 | WP_002453105.1 | ribonuclease J2 | - |
| OP858_RS07500 (OP858_07500) | pnp | 1524633..1526732 (-) | 2100 | WP_016898112.1 | polyribonucleotide nucleotidyltransferase | - |
| OP858_RS07505 (OP858_07505) | rpsO | 1526888..1527157 (-) | 270 | WP_002436359.1 | 30S ribosomal protein S15 | - |
| OP858_RS07510 (OP858_07510) | ribF | 1527279..1528250 (-) | 972 | WP_002453103.1 | riboflavin biosynthesis protein RibF | - |
| OP858_RS07515 (OP858_07515) | truB | 1528266..1529183 (-) | 918 | WP_002453102.1 | tRNA pseudouridine(55) synthase TruB | - |
| OP858_RS07520 (OP858_07520) | rbfA | 1529326..1529676 (-) | 351 | WP_002453101.1 | 30S ribosome-binding factor RbfA | - |
| OP858_RS07525 (OP858_07525) | infB | 1529834..1532008 (-) | 2175 | WP_016898111.1 | translation initiation factor IF-2 | - |
| OP858_RS07530 (OP858_07530) | - | 1532013..1532330 (-) | 318 | WP_002453099.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| OP858_RS07535 (OP858_07535) | rnpM | 1532327..1532611 (-) | 285 | WP_002453098.1 | RNase P modulator RnpM | - |
| OP858_RS07540 (OP858_07540) | nusA | 1532628..1533851 (-) | 1224 | WP_016898110.1 | transcription termination factor NusA | - |
| OP858_RS07545 (OP858_07545) | rimP | 1533872..1534339 (-) | 468 | WP_002453096.1 | ribosome maturation factor RimP | - |
| OP858_RS07550 (OP858_07550) | - | 1534566..1538876 (-) | 4311 | WP_267263597.1 | PolC-type DNA polymerase III | - |
| OP858_RS07555 (OP858_07555) | - | 1539133..1540836 (-) | 1704 | WP_002453094.1 | proline--tRNA ligase | - |
| OP858_RS07560 (OP858_07560) | rseP | 1540856..1542142 (-) | 1287 | WP_002453093.1 | RIP metalloprotease RseP | - |
| OP858_RS07565 (OP858_07565) | - | 1542382..1543164 (-) | 783 | WP_002453092.1 | phosphatidate cytidylyltransferase | - |
| OP858_RS07570 (OP858_07570) | - | 1543168..1543938 (-) | 771 | WP_002453091.1 | isoprenyl transferase | - |
| OP858_RS07575 (OP858_07575) | frr | 1544214..1544768 (-) | 555 | WP_002453090.1 | ribosome recycling factor | - |
| OP858_RS07580 (OP858_07580) | pyrH | 1544785..1545507 (-) | 723 | WP_002436299.1 | UMP kinase | - |
| OP858_RS07585 (OP858_07585) | tsf | 1545644..1546522 (-) | 879 | WP_002453089.1 | translation elongation factor Ts | - |
| OP858_RS07590 (OP858_07590) | rpsB | 1546673..1547461 (-) | 789 | WP_002436327.1 | 30S ribosomal protein S2 | - |
| OP858_RS07595 (OP858_07595) | codY | 1547717..1548490 (-) | 774 | WP_002436324.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| OP858_RS07600 (OP858_07600) | hslU | 1548513..1549916 (-) | 1404 | WP_002453087.1 | ATP-dependent protease ATPase subunit HslU | - |
| OP858_RS07605 (OP858_07605) | hslV | 1550001..1550543 (-) | 543 | WP_002453086.1 | ATP-dependent protease subunit HslV | - |
| OP858_RS07610 (OP858_07610) | xerC | 1550547..1551437 (-) | 891 | WP_002453085.1 | tyrosine recombinase XerC | - |
| OP858_RS07615 (OP858_07615) | trmFO | 1551674..1552981 (-) | 1308 | WP_002453084.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| OP858_RS07620 (OP858_07620) | topA | 1553007..1555082 (-) | 2076 | WP_029625697.1 | type I DNA topoisomerase | - |
| OP858_RS07625 (OP858_07625) | dprA | 1555260..1556132 (-) | 873 | WP_002453082.1 | DNA-processing protein DprA | Machinery gene |
| OP858_RS07630 (OP858_07630) | sucD | 1556620..1557528 (-) | 909 | WP_002453081.1 | succinate--CoA ligase subunit alpha | - |
| OP858_RS07635 (OP858_07635) | sucC | 1557550..1558716 (-) | 1167 | WP_002436291.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| OP858_RS07640 (OP858_07640) | - | 1558824..1559594 (-) | 771 | WP_002453080.1 | ribonuclease HII | - |
| OP858_RS07645 (OP858_07645) | ylqF | 1559596..1560462 (-) | 867 | WP_267263383.1 | ribosome biogenesis GTPase YlqF | - |
| OP858_RS07650 (OP858_07650) | - | 1560742..1563342 (+) | 2601 | WP_064262579.1 | YfhO family protein | - |
| OP858_RS07655 (OP858_07655) | - | 1563335..1565956 (+) | 2622 | WP_002453077.1 | YfhO family protein | - |
| OP858_RS07660 (OP858_07660) | - | 1566052..1566192 (-) | 141 | Protein_1463 | IS3 family transposase | - |
| OP858_RS07665 (OP858_07665) | - | 1566404..1566562 (+) | 159 | WP_002453076.1 | hypothetical protein | - |
| OP858_RS07670 (OP858_07670) | - | 1566883..1567050 (+) | 168 | WP_229716903.1 | hypothetical protein | - |
| OP858_RS07675 (OP858_07675) | rplS | 1567627..1567977 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| OP858_RS07680 (OP858_07680) | trmD | 1568083..1568820 (-) | 738 | WP_267263384.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| OP858_RS07685 (OP858_07685) | rimM | 1568820..1569323 (-) | 504 | WP_002453072.1 | ribosome maturation factor RimM | - |
| OP858_RS07690 (OP858_07690) | rpsP | 1569610..1569885 (-) | 276 | WP_002453071.1 | 30S ribosomal protein S16 | - |
| OP858_RS07695 (OP858_07695) | ffh | 1570311..1571678 (-) | 1368 | WP_002453070.1 | signal recognition particle protein | - |
| OP858_RS07700 (OP858_07700) | - | 1571709..1572041 (-) | 333 | WP_002453069.1 | putative DNA-binding protein | - |
| OP858_RS07705 (OP858_07705) | ftsY | 1572028..1573287 (-) | 1260 | WP_002453068.1 | signal recognition particle-docking protein FtsY | - |
| OP858_RS07710 (OP858_07710) | smc | 1573284..1576853 (-) | 3570 | WP_267263385.1 | chromosome segregation protein SMC | - |
| OP858_RS07715 (OP858_07715) | rnc | 1576977..1577690 (-) | 714 | WP_222127027.1 | ribonuclease III | - |
| OP858_RS07720 (OP858_07720) | - | 1577831..1578064 (-) | 234 | WP_267263386.1 | acyl carrier protein | - |
| OP858_RS07725 (OP858_07725) | fabG | 1578663..1579397 (-) | 735 | WP_002435264.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| OP858_RS07730 (OP858_07730) | fabD | 1579390..1580316 (-) | 927 | WP_049390984.1 | ACP S-malonyltransferase | - |
| OP858_RS07735 (OP858_07735) | plsX | 1580309..1581295 (-) | 987 | WP_267263387.1 | phosphate acyltransferase PlsX | - |
| OP858_RS07740 (OP858_07740) | fapR | 1581288..1581857 (-) | 570 | WP_002453061.1 | transcription factor FapR | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37971.88 Da Isoelectric Point: 4.9318
>NTDB_id=756102 OP858_RS07445 WP_002437037.1 1511498..1512550(-) (recA) [Staphylococcus capitis strain CCSM0123]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
Nucleotide
Download Length: 1053 bp
>NTDB_id=756102 OP858_RS07445 WP_002437037.1 1511498..1512550(-) (recA) [Staphylococcus capitis strain CCSM0123]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCGGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACTTCAAGTGGTTCTGTGACGGTGGATAATGCCCTAGGTGTAGGCG
GTTATCCTAAAGGAAGAATTATTGAAATTTATGGACCTGAAAGTTCAGGTAAAACAACAGTTGCTCTACATGCAATTGCA
GAAGTTCAAAAAAATGGTGGAGTAGCTGCATTTATTGATGCCGAACATGCACTTGACCCTGTTTATGCTCAAGCTTTAGG
CGTAGATATTGATAACCTTTATTTATCTCAACCTGACCATGGGGAACAAGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCCGTAGACATTGTCGTAGTTGACTCTGTAGCAGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCTAGATTAATGTCACAAGCTTTAAGAAAATTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCTGAAACTACGCCAGGTGGCCGAGCAT
TAAAATTCTATAGTTCTGTAAGATTGGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACAAAAATCAAAGTTGTAAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTATGGTCAAGGAAT
TTCTAAAGAAGGTGAATTAATTGACTTAGGTGTTGAAAACGATATCGTTGATAAATCTGGCGCTTGGTATTCTTACAACG
GCGACCGAATGGGTCAAGGTAAAGAAAATGTTAAAACGTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGTGAAAAATTAGGAATATTTGATGGTGACGTTGAAGAAACAGATGCTGAAGAGGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCGGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACTTCAAGTGGTTCTGTGACGGTGGATAATGCCCTAGGTGTAGGCG
GTTATCCTAAAGGAAGAATTATTGAAATTTATGGACCTGAAAGTTCAGGTAAAACAACAGTTGCTCTACATGCAATTGCA
GAAGTTCAAAAAAATGGTGGAGTAGCTGCATTTATTGATGCCGAACATGCACTTGACCCTGTTTATGCTCAAGCTTTAGG
CGTAGATATTGATAACCTTTATTTATCTCAACCTGACCATGGGGAACAAGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCCGTAGACATTGTCGTAGTTGACTCTGTAGCAGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCTAGATTAATGTCACAAGCTTTAAGAAAATTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCTGAAACTACGCCAGGTGGCCGAGCAT
TAAAATTCTATAGTTCTGTAAGATTGGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACAAAAATCAAAGTTGTAAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTATGGTCAAGGAAT
TTCTAAAGAAGGTGAATTAATTGACTTAGGTGTTGAAAACGATATCGTTGATAAATCTGGCGCTTGGTATTCTTACAACG
GCGACCGAATGGGTCAAGGTAAAGAAAATGTTAAAACGTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGTGAAAAATTAGGAATATTTGATGGTGACGTTGAAGAAACAGATGCTGAAGAGGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
Similar proteins
Only experimentally validated proteins are listed.