Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OKX00_RS12925 Genome accession   NZ_CP110666
Coordinates   2493444..2494493 (-) Length   349 a.a.
NCBI ID   WP_265407636.1    Uniprot ID   -
Organism   Fictibacillus sp. KU28468     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2488444..2499493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKX00_RS12905 (OKX00_12905) spoVS 2489918..2490178 (-) 261 WP_053354424.1 stage V sporulation protein SpoVS -
  OKX00_RS12910 (OKX00_12910) - 2490308..2491102 (-) 795 WP_053354425.1 TIGR00282 family metallophosphoesterase -
  OKX00_RS12915 (OKX00_12915) rny 2491160..2492725 (-) 1566 WP_053354426.1 ribonuclease Y -
  OKX00_RS12920 (OKX00_12920) - 2493136..2493363 (+) 228 WP_265407635.1 hypothetical protein -
  OKX00_RS12925 (OKX00_12925) recA 2493444..2494493 (-) 1050 WP_265407636.1 recombinase RecA Machinery gene
  OKX00_RS12930 (OKX00_12930) cinA 2494618..2495859 (-) 1242 WP_265407637.1 competence/damage-inducible protein A Machinery gene
  OKX00_RS12935 (OKX00_12935) pgsA 2495944..2496522 (-) 579 WP_053354429.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OKX00_RS12940 (OKX00_12940) - 2496571..2497455 (-) 885 WP_062231838.1 helix-turn-helix domain-containing protein -
  OKX00_RS12945 (OKX00_12945) - 2497481..2498254 (-) 774 WP_053354431.1 DUF3388 domain-containing protein -
  OKX00_RS12950 (OKX00_12950) - 2498412..2498669 (-) 258 WP_053354432.1 DUF3243 domain-containing protein -
  OKX00_RS12955 (OKX00_12955) ymfI 2498768..2499493 (-) 726 WP_091005505.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37940.05 Da        Isoelectric Point: 4.8663

>NTDB_id=755873 OKX00_RS12925 WP_265407636.1 2493444..2494493(-) (recA) [Fictibacillus sp. KU28468]
MSDRKAALEMALRQIEKQFGKGSIMKLGEQAEQRVSTISSGSLALDISLGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQRNGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILIIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGTDMVGNKT
RIKVVKNKVAPPFKTAEVDIMYGEGISREGEILDIGSDIDVVQKSGAWYSFEGDRLGQGRENSKQFLKENKEVAEEIITQ
IRSYYRLGEEANTPEPATKEEAEEFELSE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=755873 OKX00_RS12925 WP_265407636.1 2493444..2494493(-) (recA) [Fictibacillus sp. KU28468]
ATGAGCGACCGCAAAGCGGCATTGGAAATGGCCTTGCGCCAGATTGAAAAACAATTCGGAAAAGGATCCATCATGAAACT
TGGCGAGCAGGCTGAACAGAGAGTTTCCACCATCTCCAGCGGATCTCTTGCGCTTGATATCTCACTTGGCGTAGGCGGAT
ATCCAAGAGGGCGGATCATCGAAGTATACGGACCTGAATCATCCGGTAAGACAACAGTTGCTCTGCATGCGATTGCAGAA
GTGCAGAGAAACGGCGGACAAGCTGCGTTCATTGATGCAGAACATGCGCTTGATCCTGTCTATGCCCAAAAGCTCGGCGT
AAACATTGATGAGCTTCTTTTATCTCAGCCGGATACTGGCGAACAGGCTCTTGAGATCGCGGAAGCCCTTGTCCGAAGCG
GAGCAGTGGATATTCTGATCATTGACTCGGTTGCGGCTTTGGTCCCTAAAGCAGAGATCGAAGGAGAAATGGGAGATTCC
CACGTAGGTCTTCAGGCAAGACTGATGTCTCAGGCATTAAGAAAACTTTCCGGAGCGATCAGCAAATCAAAAACCATCGC
GGTATTCATTAACCAGATCCGTGAAAAAGTCGGCGTGATGTTCGGGAACCCGGAAACTACACCTGGGGGCCGTGCATTAA
AGTTCTATTCTTCTGTCCGTTTGGAAGTACGCCGTGCTGAAACATTGAAACAGGGCACGGATATGGTAGGGAACAAAACA
AGAATTAAAGTGGTTAAGAATAAAGTGGCTCCTCCATTCAAGACGGCGGAAGTAGACATCATGTACGGTGAAGGGATTTC
AAGAGAAGGTGAAATCCTTGATATCGGTTCCGATATTGACGTCGTTCAAAAAAGCGGTGCCTGGTATTCCTTTGAAGGAG
ACCGCCTTGGCCAGGGAAGAGAGAATTCCAAACAATTCCTGAAAGAGAACAAGGAAGTAGCAGAAGAGATCATTACACAG
ATCAGAAGCTACTATCGCCTCGGTGAAGAAGCCAACACTCCAGAACCTGCAACAAAGGAAGAAGCAGAGGAGTTTGAATT
ATCCGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.709

93.696

0.794
  recA Latilactobacillus sakei subsp. sakei 23K

71.386

97.135

0.693
  recA Streptococcus pneumoniae Rx1

66.289

100

0.67
  recA Streptococcus pneumoniae TIGR4

66.289

100

0.67
  recA Streptococcus pneumoniae D39

66.289

100

0.67
  recA Streptococcus pneumoniae R6

66.289

100

0.67
  recA Streptococcus mutans UA159

66.379

99.713

0.662
  recA Streptococcus mitis SK321

68.452

96.275

0.659
  recA Streptococcus mitis NCTC 12261

68.06

95.989

0.653
  recA Streptococcus pyogenes NZ131

67.278

93.696

0.63
  recA Lactococcus lactis subsp. cremoris KW2

65.758

94.556

0.622
  recA Neisseria gonorrhoeae MS11

66.462

93.123

0.619
  recA Neisseria gonorrhoeae MS11

66.462

93.123

0.619
  recA Neisseria gonorrhoeae strain FA1090

66.462

93.123

0.619
  recA Pseudomonas stutzeri DSM 10701

60.87

98.854

0.602
  recA Vibrio cholerae strain A1552

65.312

91.691

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.312

91.691

0.599
  recA Glaesserella parasuis strain SC1401

60.704

97.708

0.593
  recA Acinetobacter baylyi ADP1

58.857

100

0.59
  recA Ralstonia pseudosolanacearum GMI1000

66.129

88.825

0.587
  recA Helicobacter pylori strain NCTC11637

58.841

98.854

0.582
  recA Helicobacter pylori 26695

58.841

98.854

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.656

93.41

0.576
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.112

92.264

0.573
  recA Acinetobacter baumannii D1279779

62.5

91.691

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.021

93.696

0.553