Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   OKX00_RS12930 Genome accession   NZ_CP110666
Coordinates   2494618..2495859 (-) Length   413 a.a.
NCBI ID   WP_265407637.1    Uniprot ID   -
Organism   Fictibacillus sp. KU28468     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2489618..2500859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKX00_RS12905 (OKX00_12905) spoVS 2489918..2490178 (-) 261 WP_053354424.1 stage V sporulation protein SpoVS -
  OKX00_RS12910 (OKX00_12910) - 2490308..2491102 (-) 795 WP_053354425.1 TIGR00282 family metallophosphoesterase -
  OKX00_RS12915 (OKX00_12915) rny 2491160..2492725 (-) 1566 WP_053354426.1 ribonuclease Y -
  OKX00_RS12920 (OKX00_12920) - 2493136..2493363 (+) 228 WP_265407635.1 hypothetical protein -
  OKX00_RS12925 (OKX00_12925) recA 2493444..2494493 (-) 1050 WP_265407636.1 recombinase RecA Machinery gene
  OKX00_RS12930 (OKX00_12930) cinA 2494618..2495859 (-) 1242 WP_265407637.1 competence/damage-inducible protein A Machinery gene
  OKX00_RS12935 (OKX00_12935) pgsA 2495944..2496522 (-) 579 WP_053354429.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OKX00_RS12940 (OKX00_12940) - 2496571..2497455 (-) 885 WP_062231838.1 helix-turn-helix domain-containing protein -
  OKX00_RS12945 (OKX00_12945) - 2497481..2498254 (-) 774 WP_053354431.1 DUF3388 domain-containing protein -
  OKX00_RS12950 (OKX00_12950) - 2498412..2498669 (-) 258 WP_053354432.1 DUF3243 domain-containing protein -
  OKX00_RS12955 (OKX00_12955) ymfI 2498768..2499493 (-) 726 WP_091005505.1 elongation factor P 5-aminopentanone reductase -
  OKX00_RS12960 (OKX00_12960) yfmH 2499554..2500843 (-) 1290 WP_265410537.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44822.23 Da        Isoelectric Point: 5.2058

>NTDB_id=755874 OKX00_RS12930 WP_265407637.1 2494618..2495859(-) (cinA) [Fictibacillus sp. KU28468]
MNAEIIAVGSELLLGQIANTNAKFISAELADLGINVFYHSVVGDNPKRLESVIKTAQSRSNLLIFTGGLGPTKDDLTKET
IATVLVKNLVYDQEAMDHIEMYYKRTGRVMSENNRKQALVLEGSEILPNKHGMAPGMALHEDGLSYILLPGPPKEMQPMF
SSFAVPYLSGRLPGKEPIVSRVLRFFGIGESLLEATLQDIIDQQSNPTVAPLAGNHEVTLRLSAKFLDNKIAQEQLDVLE
GKIRERVGEFLYGYGDDSLQKAATEQLKDKKLTVSSAESLTGGWFGKQITDMPGSSEIFKGSVVCYTNEIKEQLLGVSHE
LLVSEGAVSENCAKQMAEKVRNLTGSDIGISFTGVAGPGPSENKEAGTVFIGLADETGTEVYPLALSGSRTAVRERSVMY
GLFYLLSKVKKGQ

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=755874 OKX00_RS12930 WP_265407637.1 2494618..2495859(-) (cinA) [Fictibacillus sp. KU28468]
ATGAATGCAGAAATCATTGCCGTTGGAAGCGAGCTCTTGTTGGGACAGATTGCAAACACAAATGCTAAATTTATCTCTGC
TGAATTGGCAGACTTAGGGATCAATGTTTTCTATCATTCCGTCGTGGGCGATAATCCGAAACGGCTGGAATCTGTCATAA
AAACAGCACAGAGCCGTTCAAATCTTCTCATCTTTACCGGAGGTCTCGGACCGACGAAAGATGATCTCACTAAAGAAACC
ATCGCCACTGTTCTGGTAAAGAACCTGGTCTATGACCAAGAAGCGATGGATCATATTGAAATGTACTACAAAAGAACAGG
CAGGGTCATGTCTGAGAACAATAGAAAGCAGGCACTTGTTCTTGAAGGTTCTGAGATTTTGCCGAACAAACACGGCATGG
CTCCGGGAATGGCGCTGCATGAAGACGGACTGTCCTATATTCTTCTCCCGGGCCCTCCCAAAGAAATGCAGCCGATGTTC
AGCAGCTTTGCGGTTCCTTATCTTTCAGGAAGACTGCCTGGAAAAGAGCCGATCGTCTCACGGGTTCTTCGTTTCTTCGG
GATTGGAGAATCACTGCTTGAAGCGACACTTCAGGACATTATCGATCAGCAGAGTAATCCGACTGTGGCGCCTCTCGCCG
GAAACCATGAAGTTACCCTTAGGCTCTCGGCAAAATTTCTGGACAACAAGATTGCCCAAGAGCAGCTGGACGTGCTGGAA
GGAAAAATCCGTGAGCGGGTAGGAGAGTTCCTATACGGATACGGAGATGATTCCTTGCAAAAAGCAGCCACAGAACAGCT
GAAAGATAAAAAGCTGACCGTTTCTTCTGCCGAGAGTCTGACAGGCGGATGGTTTGGAAAGCAGATAACCGACATGCCGG
GCAGTTCGGAAATATTCAAAGGCTCAGTTGTTTGTTATACGAATGAGATAAAAGAGCAGCTGCTCGGTGTTTCTCATGAG
CTGCTTGTGTCCGAGGGAGCGGTCAGCGAGAACTGCGCGAAACAGATGGCGGAAAAGGTAAGAAACCTGACCGGATCGGA
TATCGGCATCAGTTTTACCGGGGTTGCAGGACCGGGACCAAGTGAAAACAAAGAAGCCGGCACGGTCTTTATCGGACTGG
CGGATGAAACAGGCACCGAGGTGTACCCGCTGGCATTATCCGGTTCGAGGACCGCTGTCAGAGAGAGGTCTGTGATGTAC
GGATTGTTTTACTTATTATCAAAGGTCAAAAAAGGACAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-407)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.168

97.821

0.569
  cinA Streptococcus mitis NCTC 12261

47.129

100

0.477
  cinA Streptococcus mitis SK321

46.89

100

0.475
  cinA Streptococcus pneumoniae TIGR4

46.172

100

0.467
  cinA Streptococcus pneumoniae Rx1

45.694

100

0.462
  cinA Streptococcus pneumoniae R6

45.694

100

0.462
  cinA Streptococcus pneumoniae D39

45.455

100

0.46
  cinA Streptococcus mutans UA159

45.946

98.547

0.453
  cinA Streptococcus suis isolate S10

40.051

94.915

0.38