Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   QEP20_RS02420 Genome accession   NZ_CP123977
Coordinates   474296..474730 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis strain WH60A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 469296..479730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP20_RS02390 (QEP20_02390) ydaD 469946..470806 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  QEP20_RS02395 (QEP20_02395) lyxE 470822..471325 (+) 504 WP_021481729.1 D-lyxose ketol-isomerase -
  QEP20_RS02400 (QEP20_02400) ydaF 471411..471962 (+) 552 WP_038427389.1 GNAT family protein -
  QEP20_RS02405 (QEP20_02405) ydaG 472040..472462 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  QEP20_RS02410 (QEP20_02410) amj 472968..473777 (+) 810 WP_038427391.1 lipid II flippase Amj -
  QEP20_RS02415 (QEP20_02415) ydzA 473821..474111 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  QEP20_RS02420 (QEP20_02420) lrpC 474296..474730 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  QEP20_RS02425 (QEP20_02425) topB 474795..476978 (+) 2184 WP_038427393.1 DNA topoisomerase III -
  QEP20_RS02430 (QEP20_02430) - 477181..478269 (+) 1089 WP_038427395.1 hypothetical protein -
  QEP20_RS02435 (QEP20_02435) epsK 478250..479101 (+) 852 WP_033883717.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=753489 QEP20_RS02420 WP_003246585.1 474296..474730(+) (lrpC) [Bacillus subtilis subsp. subtilis strain WH60A]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=753489 QEP20_RS02420 WP_003246585.1 474296..474730(+) (lrpC) [Bacillus subtilis subsp. subtilis strain WH60A]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCACCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1