Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   OMJ04_RS08465 Genome accession   NZ_CP110263
Coordinates   1753894..1755126 (+) Length   410 a.a.
NCBI ID   WP_034315395.1    Uniprot ID   A0AAN2PGV7
Organism   Peribacillus frigoritolerans strain HMB20428     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1748894..1760126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMJ04_RS08440 (OMJ04_08440) ymfI 1750110..1750835 (+) 726 WP_048684725.1 elongation factor P 5-aminopentanone reductase -
  OMJ04_RS08445 (OMJ04_08445) - 1750916..1751173 (+) 258 WP_053534398.1 DUF3243 domain-containing protein -
  OMJ04_RS08450 (OMJ04_08450) - 1751416..1752207 (+) 792 WP_034313530.1 DUF3388 domain-containing protein -
  OMJ04_RS08455 (OMJ04_08455) - 1752216..1753121 (+) 906 WP_319951997.1 RodZ family helix-turn-helix domain-containing protein -
  OMJ04_RS08460 (OMJ04_08460) pgsA 1753287..1753871 (+) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OMJ04_RS08465 (OMJ04_08465) cinA 1753894..1755126 (+) 1233 WP_034315395.1 competence/damage-inducible protein A Machinery gene
  OMJ04_RS08470 (OMJ04_08470) recA 1755476..1756522 (+) 1047 WP_034313522.1 recombinase RecA Machinery gene
  OMJ04_RS08475 (OMJ04_08475) rny 1756876..1758435 (+) 1560 WP_034313519.1 ribonuclease Y -
  OMJ04_RS08480 (OMJ04_08480) - 1758588..1759385 (+) 798 WP_063591644.1 TIGR00282 family metallophosphoesterase -
  OMJ04_RS08485 (OMJ04_08485) spoVS 1759559..1759819 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44983.29 Da        Isoelectric Point: 5.0424

>NTDB_id=753488 OMJ04_RS08465 WP_034315395.1 1753894..1755126(+) (cinA) [Peribacillus frigoritolerans strain HMB20428]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFQKRERPMTENNKKQALVLEGSEVLANDHGMAPGMVLSKSGITYMLLPGPPSEMEPMF
LSYGYEKIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKGPSKEKCEELILETE
KEILSRVGKFHYGSDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGMVCYTNDAKSNVLGVSDD
TISEYGVVSGECAMEMASNVRSKLDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGNTHFKELNLSGSRAQNRIRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=753488 OMJ04_RS08465 WP_034315395.1 1753894..1755126(+) (cinA) [Peribacillus frigoritolerans strain HMB20428]
ATGGATGCAGAAATCATTGCAGTGGGCTCAGAGCTTCTTTTAGGTCAAATCAATAACACTAATGGAAGATTCTTATCGCA
GCAGTTTGCGGAAATGGGAATCAACGTTTTTTACCATACTGTGGTCGGAGATAACGACCGCCGATTACAACAAGCTATAG
AAATCGCTGAATCGAGGGCGAACTTGATTGTTTTTACCGGTGGGCTTGGTCCTACCAAAGATGACTTAACGAAAGAAACG
ATTGCTCGCCATATCGGGAAAAAGCTCGTTTTTAATGATGAAGCTTTGCAATCCATTGAAGCTTACTTCCAAAAACGGGA
ACGGCCGATGACGGAAAACAACAAAAAGCAGGCCCTTGTCTTGGAAGGCAGTGAAGTGTTGGCAAACGATCATGGCATGG
CCCCGGGAATGGTTTTGTCCAAATCTGGGATTACATATATGCTCCTGCCTGGTCCACCAAGTGAAATGGAGCCGATGTTT
TTAAGTTATGGTTATGAAAAAATCATGAATAAATTGGAAAAGCATGAACGGATCGATTCCAAGGTTCTTCGGTTCTACGG
TATAGGTGAAGCCGAACTGGAAACGGTGATTGAAGATCTCCTTGTCAATCAAACGAATCCGACAATCGCTCCGCTGGCAG
CCGAAGGGGAAGTGACGTTAAGGATCACCGCCAAAGGCCCTTCTAAAGAAAAATGCGAAGAACTTATTTTAGAAACGGAA
AAAGAAATTCTTAGCCGGGTCGGTAAGTTCCATTATGGAAGTGATAATACTTCGCTAATAAAGGAACTTGTAAAAGAATT
AACGGTCCGCAAGCTTTCAATCGCGGCAGCTGAAAGCTTGACCGGGGGGATGTTCCAAGAACAGCTGACAACCATCCCGG
GCGCCGGTAAAGTCTTTAAGGGCGGAATGGTCTGCTATACGAATGATGCGAAGTCCAATGTCCTCGGCGTCAGTGATGAT
ACCATATCTGAGTATGGGGTGGTCAGCGGCGAGTGTGCAATGGAAATGGCCTCTAATGTCCGGAGTAAGCTCGATGCGGA
TGTAGGCATAAGCTTTACGGGTGTTGCGGGGCCGGACGAACAAGAAGGCAAGCCTGTAGGTACAGTATTTATTGGCATTT
CCTATCGGGATGGAAACACTCACTTCAAGGAGTTGAATCTTTCCGGAAGCAGGGCGCAAAACCGTATTCGGAGTGTGAAG
TACGGCTGTCATTATCTATTAAGGGATTTATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.824

99.512

0.585
  cinA Streptococcus pneumoniae TIGR4

45

100

0.461
  cinA Streptococcus mitis SK321

44.762

100

0.459
  cinA Streptococcus pneumoniae Rx1

44.524

100

0.456
  cinA Streptococcus pneumoniae R6

44.524

100

0.456
  cinA Streptococcus pneumoniae D39

44.286

100

0.454
  cinA Streptococcus mitis NCTC 12261

44.286

100

0.454
  cinA Streptococcus mutans UA159

43.317

98.537

0.427
  cinA Streptococcus suis isolate S10

39.098

97.317

0.38