Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QFX54_RS05755 Genome accession   NZ_CP123750
Coordinates   1189586..1190359 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 1.9a     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1184586..1195359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX54_RS05735 trmFO 1184930..1186237 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  QFX54_RS05740 xerC 1186654..1187550 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  QFX54_RS05745 hslV 1187547..1188092 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  QFX54_RS05750 hslU 1188158..1189561 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  QFX54_RS05755 codY 1189586..1190359 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QFX54_RS05760 - 1190410..1190502 (+) 93 WP_001790530.1 hypothetical protein -
  QFX54_RS05765 rpsB 1190701..1191468 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  QFX54_RS05770 - 1191502..1191615 (+) 114 WP_001789890.1 hypothetical protein -
  QFX54_RS05775 tsf 1191650..1192531 (+) 882 WP_000201387.1 translation elongation factor Ts -
  QFX54_RS05780 pyrH 1192668..1193390 (+) 723 WP_000057330.1 UMP kinase -
  QFX54_RS05785 frr 1193409..1193963 (+) 555 WP_001280006.1 ribosome recycling factor -
  QFX54_RS05790 - 1194336..1195106 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=752585 QFX54_RS05755 WP_000055337.1 1189586..1190359(+) (codY) [Staphylococcus aureus strain 1.9a]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=752585 QFX54_RS05755 WP_000055337.1 1189586..1190359(+) (codY) [Staphylococcus aureus strain 1.9a]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428