Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   OJ967_RS08870 Genome accession   NZ_CP110132
Coordinates   1829062..1830294 (+) Length   410 a.a.
NCBI ID   WP_057278384.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain Q2H1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1824062..1835294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OJ967_RS08845 (OJ967_08845) ymfI 1825273..1825998 (+) 726 WP_048684725.1 elongation factor P 5-aminopentanone reductase -
  OJ967_RS08850 (OJ967_08850) - 1826080..1826337 (+) 258 WP_034313532.1 DUF3243 domain-containing protein -
  OJ967_RS08855 (OJ967_08855) - 1826582..1827373 (+) 792 WP_034313530.1 DUF3388 domain-containing protein -
  OJ967_RS08860 (OJ967_08860) - 1827382..1828290 (+) 909 WP_306804770.1 helix-turn-helix domain-containing protein -
  OJ967_RS08865 (OJ967_08865) pgsA 1828455..1829039 (+) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OJ967_RS08870 (OJ967_08870) cinA 1829062..1830294 (+) 1233 WP_057278384.1 competence/damage-inducible protein A Machinery gene
  OJ967_RS08875 (OJ967_08875) recA 1830643..1831689 (+) 1047 WP_034313522.1 recombinase RecA Machinery gene
  OJ967_RS08880 (OJ967_08880) rny 1832042..1833601 (+) 1560 WP_034313519.1 ribonuclease Y -
  OJ967_RS08885 (OJ967_08885) - 1833754..1834551 (+) 798 WP_063591644.1 TIGR00282 family metallophosphoesterase -
  OJ967_RS08890 (OJ967_08890) spoVS 1834725..1834985 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44953.27 Da        Isoelectric Point: 5.0424

>NTDB_id=752584 OJ967_RS08870 WP_057278384.1 1829062..1830294(+) (cinA) [Peribacillus frigoritolerans strain Q2H1]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFQKRERPMTENNKKQALVLEGSEVLANDHGMAPGMVLSKSGITYMLLPGPPSEMEPMF
LSYGYEKIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKGPSKEKCEELILETE
KEILGRVGKFHYGSDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGMVCYTNDAKSNVLGVSDD
TISEYGVVSGECAMEMASNVRSKLDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGNTHFKELNLSGSRAQNRIRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=752584 OJ967_RS08870 WP_057278384.1 1829062..1830294(+) (cinA) [Peribacillus frigoritolerans strain Q2H1]
ATGGATGCAGAAATCATTGCAGTGGGCTCAGAGCTTCTTTTAGGTCAAATCAATAACACTAATGGAAGATTCTTATCGCA
GCAGTTTGCGGAAATGGGGATCAACGTTTTTTACCATACTGTGGTCGGGGATAACGACCGCCGATTACAACAAGCTATAG
AAATCGCTGAATCGAGGGCGAACTTGATTGTTTTTACCGGTGGGCTTGGTCCTACCAAAGATGACTTAACGAAAGAAACG
ATTGCTCGCCATATCGGGAAAAAGCTCGTTTTTAATGATGAAGCTTTGCAATCCATTGAAGCTTACTTCCAAAAACGGGA
ACGGCCGATGACGGAAAACAACAAAAAGCAGGCCCTTGTCTTAGAAGGCAGTGAAGTGTTGGCAAACGATCATGGCATGG
CCCCAGGAATGGTTTTGTCCAAATCCGGGATTACATATATGCTCCTGCCTGGTCCACCAAGTGAAATGGAGCCGATGTTT
TTAAGTTATGGTTATGAAAAGATCATGAATAAATTGGAAAAGCATGAACGGATCGATTCCAAGGTTTTACGGTTCTACGG
TATAGGTGAAGCCGAACTGGAAACGGTGATTGAAGATCTCCTTGTCAATCAAACGAATCCGACAATCGCTCCGCTGGCAG
CCGAAGGGGAAGTGACGTTAAGGATCACCGCCAAAGGCCCTTCCAAAGAAAAATGCGAAGAACTTATTTTAGAAACGGAA
AAAGAAATTCTTGGCAGGGTCGGCAAGTTCCATTATGGAAGTGATAATACTTCGCTAATAAAGGAACTTGTAAAAGAATT
AACGGTCCGCAAGCTTTCAATTGCGGCAGCTGAAAGCTTGACCGGGGGGATGTTCCAAGAACAGCTGACAACCATCCCGG
GCGCCGGTAAAGTCTTTAAGGGCGGAATGGTCTGCTATACGAATGATGCGAAGTCCAATGTCCTCGGCGTCAGTGATGAT
ACCATATCTGAGTATGGGGTGGTCAGCGGTGAGTGTGCAATGGAAATGGCCTCTAATGTCCGGAGTAAGCTCGATGCGGA
TGTAGGCATAAGTTTTACGGGTGTTGCAGGGCCGGATGAACAAGAAGGCAAGCCTGTTGGTACAGTATTTATTGGCATTT
CCTATCGCGATGGAAACACTCATTTCAAGGAGTTGAATCTTTCCGGTAGCAGGGCGCAAAACCGTATTCGGAGTGTGAAA
TACGGCTGTCATTACCTATTAAGGGATTTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.824

99.512

0.585
  cinA Streptococcus pneumoniae TIGR4

45

100

0.461
  cinA Streptococcus mitis SK321

45

100

0.461
  cinA Streptococcus pneumoniae Rx1

44.524

100

0.456
  cinA Streptococcus mitis NCTC 12261

44.524

100

0.456
  cinA Streptococcus pneumoniae R6

44.524

100

0.456
  cinA Streptococcus pneumoniae D39

44.286

100

0.454
  cinA Streptococcus mutans UA159

43.317

98.537

0.427
  cinA Streptococcus suis isolate S10

38.847

97.317

0.378