Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OFW50_RS04205 Genome accession   NZ_CP107523
Coordinates   841842..842885 (+) Length   347 a.a.
NCBI ID   WP_129302210.1    Uniprot ID   -
Organism   Lacticaseibacillus chiayiensis strain AACE 3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 836842..847885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFW50_RS04185 (OFW50_04185) ymfI 837979..838707 (+) 729 WP_129301659.1 elongation factor P 5-aminopentanone reductase -
  OFW50_RS04190 (OFW50_04190) - 838794..839693 (+) 900 WP_129301658.1 helix-turn-helix domain-containing protein -
  OFW50_RS04195 (OFW50_04195) pgsA 839690..840283 (+) 594 WP_129301657.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OFW50_RS04200 (OFW50_04200) cinA 840552..841793 (+) 1242 WP_263932658.1 competence/damage-inducible protein A Machinery gene
  OFW50_RS04205 (OFW50_04205) recA 841842..842885 (+) 1044 WP_129302210.1 recombinase RecA Machinery gene
  OFW50_RS04210 (OFW50_04210) rny 843352..844923 (+) 1572 WP_010489446.1 ribonuclease Y -
  OFW50_RS04215 (OFW50_04215) - 845070..845723 (-) 654 WP_129302209.1 YigZ family protein -
  OFW50_RS04220 (OFW50_04220) - 845751..847013 (+) 1263 WP_129302208.1 DEAD/DEAH box helicase -
  OFW50_RS04225 (OFW50_04225) - 847171..847689 (+) 519 WP_129302207.1 ComF family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37501.00 Da        Isoelectric Point: 5.7471

>NTDB_id=740430 OFW50_RS04205 WP_129302210.1 841842..842885(+) (recA) [Lacticaseibacillus chiayiensis strain AACE 3]
MAEKERQEALATALKKIEKNFGKGAIMKMCDKADTRVSAISSGSLAIDEALGVGGLPRGRIVEMYGPESSGKTTVALHAV
AMVQQHGGTAAYIDAENAMDPKYATALGVNIDDLLLSQPDTGEQGLEIADELVASGAIDILVIDSVAALVPQAEIDGDMG
DAHVGLQARMMSQALRKLSGNISKTKTIAIFINQIREKVGIVFGNPEITPGGRALKFYATVRLEIRRSEQIKNGAEIIGN
RTKIKVVKNKVAPPFKVAIVDIMYGRGISQSGELVDMAVEKEIIEKSGSWYAYQGERIGQGREHAKTYLENHEEMHKKIE
AQVREAYGMPLNQVIEVEDPDVSVRAS

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=740430 OFW50_RS04205 WP_129302210.1 841842..842885(+) (recA) [Lacticaseibacillus chiayiensis strain AACE 3]
GTGGCAGAAAAAGAACGACAGGAAGCGTTGGCGACAGCATTAAAGAAGATCGAAAAGAATTTTGGTAAAGGGGCCATCAT
GAAAATGTGCGACAAGGCTGATACACGTGTTTCGGCCATTTCCAGTGGCTCACTTGCGATTGATGAAGCACTTGGCGTTG
GTGGCCTGCCACGTGGGCGGATTGTCGAGATGTATGGTCCCGAAAGTTCCGGGAAAACCACTGTTGCCCTGCATGCGGTG
GCAATGGTGCAACAGCATGGCGGAACAGCGGCTTATATTGATGCGGAAAATGCCATGGATCCTAAGTATGCGACCGCGCT
AGGAGTCAACATTGATGACCTGTTGCTGTCCCAACCAGACACTGGTGAACAAGGACTGGAGATTGCTGACGAATTGGTCG
CCTCAGGAGCGATTGATATTCTGGTAATTGATTCGGTGGCCGCGCTAGTCCCGCAAGCCGAGATTGACGGTGACATGGGT
GATGCACACGTTGGCTTACAGGCACGAATGATGTCACAAGCATTGCGGAAACTGTCTGGCAACATCAGTAAGACGAAAAC
CATTGCAATCTTTATTAACCAGATTCGTGAGAAAGTCGGCATCGTTTTTGGTAACCCGGAAATAACGCCGGGCGGTCGGG
CCTTAAAGTTTTATGCAACAGTACGGCTGGAAATCCGCCGCTCTGAACAAATTAAAAACGGTGCGGAAATTATCGGTAAT
CGCACTAAAATCAAGGTTGTCAAAAACAAGGTGGCGCCGCCTTTCAAAGTGGCGATTGTGGACATTATGTATGGTCGTGG
CATTTCACAAAGCGGTGAACTCGTCGATATGGCGGTTGAAAAAGAGATCATTGAAAAGTCCGGATCGTGGTACGCCTACC
AAGGTGAGCGAATCGGTCAAGGACGCGAGCATGCCAAGACTTACCTTGAAAATCATGAGGAAATGCATAAAAAGATTGAG
GCACAAGTGCGTGAAGCTTACGGAATGCCGTTAAACCAAGTGATTGAAGTGGAAGATCCGGATGTATCAGTGCGAGCTTC
CTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

76.657

100

0.767
  recA Bacillus subtilis subsp. subtilis str. 168

69.486

95.389

0.663
  recA Lactococcus lactis subsp. cremoris KW2

67.477

94.813

0.64
  recA Streptococcus mutans UA159

67.173

94.813

0.637
  recA Streptococcus pyogenes NZ131

66.768

94.524

0.631
  recA Streptococcus mitis NCTC 12261

66.261

94.813

0.628
  recA Streptococcus mitis SK321

66.261

94.813

0.628
  recA Streptococcus pneumoniae Rx1

66.261

94.813

0.628
  recA Streptococcus pneumoniae D39

66.261

94.813

0.628
  recA Streptococcus pneumoniae R6

66.261

94.813

0.628
  recA Streptococcus pneumoniae TIGR4

66.261

94.813

0.628
  recA Ralstonia pseudosolanacearum GMI1000

62.037

93.372

0.579
  recA Acinetobacter baumannii D1279779

57.267

99.135

0.568
  recA Acinetobacter baylyi ADP1

60.372

93.084

0.562
  recA Vibrio cholerae strain A1552

58.485

95.101

0.556
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.485

95.101

0.556
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.021

94.236

0.556
  recA Pseudomonas stutzeri DSM 10701

59.627

92.795

0.553
  recA Neisseria gonorrhoeae strain FA1090

60.377

91.643

0.553
  recA Neisseria gonorrhoeae MS11

60.377

91.643

0.553
  recA Neisseria gonorrhoeae MS11

60.377

91.643

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.642

93.372

0.548
  recA Glaesserella parasuis strain SC1401

55.917

97.406

0.545
  recA Helicobacter pylori strain NCTC11637

54.925

96.542

0.53
  recA Helicobacter pylori 26695

54.627

96.542

0.527
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.963

94.524

0.51