Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   OFW50_RS04200 Genome accession   NZ_CP107523
Coordinates   840552..841793 (+) Length   413 a.a.
NCBI ID   WP_263932658.1    Uniprot ID   -
Organism   Lacticaseibacillus chiayiensis strain AACE 3     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 835552..846793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFW50_RS04180 (OFW50_04180) yfmH 836687..837982 (+) 1296 WP_213224316.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  OFW50_RS04185 (OFW50_04185) ymfI 837979..838707 (+) 729 WP_129301659.1 elongation factor P 5-aminopentanone reductase -
  OFW50_RS04190 (OFW50_04190) - 838794..839693 (+) 900 WP_129301658.1 helix-turn-helix domain-containing protein -
  OFW50_RS04195 (OFW50_04195) pgsA 839690..840283 (+) 594 WP_129301657.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OFW50_RS04200 (OFW50_04200) cinA 840552..841793 (+) 1242 WP_263932658.1 competence/damage-inducible protein A Machinery gene
  OFW50_RS04205 (OFW50_04205) recA 841842..842885 (+) 1044 WP_129302210.1 recombinase RecA Machinery gene
  OFW50_RS04210 (OFW50_04210) rny 843352..844923 (+) 1572 WP_010489446.1 ribonuclease Y -
  OFW50_RS04215 (OFW50_04215) - 845070..845723 (-) 654 WP_129302209.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44369.91 Da        Isoelectric Point: 7.0873

>NTDB_id=740429 OFW50_RS04200 WP_263932658.1 840552..841793(+) (cinA) [Lacticaseibacillus chiayiensis strain AACE 3]
MQAEIIAVGTEILMGQITNTNGAYMAKQLAALGIASYHQQVVGDNAQRLADAISLAEKRSDIVILIGGLGPTPDDLTKQT
LASHLNLPLVEDADAMAKLTARVKQQQRPMTPNNKLQAMYPQGADVLVNRVGLAVGAWIKQKQHAYVLLPGPPKEFVPMV
DHELLPHLAKYSGHHEVLVSRVMRFFGIGESQLVTDLGDLIAKQTNPTLATYIKDHEVTIRVTASGKTQTDADAKLEPVI
GTIMDREGRYFYGYGDDNSLVKELVKALAATDKQITAAESLTAGEFQAALGDVPGVSSYFKGGFVTYSLATKAAFLNIDA
RELAAHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDTLEGQPAGTVWIGLARLGQAPIAQVYHFPGSRNDVRKRAV
MTGMMMALRSLRD

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=740429 OFW50_RS04200 WP_263932658.1 840552..841793(+) (cinA) [Lacticaseibacillus chiayiensis strain AACE 3]
ATGCAAGCAGAGATTATTGCCGTCGGAACTGAAATTCTGATGGGTCAGATTACCAATACTAATGGCGCCTATATGGCTAA
ACAATTGGCCGCTCTTGGAATTGCTAGCTATCATCAACAAGTTGTCGGTGACAATGCGCAGCGCTTGGCGGATGCGATCA
GCTTAGCCGAAAAACGCAGTGACATCGTGATTTTGATTGGCGGTTTGGGACCAACGCCGGATGACTTGACAAAACAAACG
TTGGCGTCACATTTAAATTTACCACTGGTTGAAGATGCCGATGCGATGGCAAAATTGACAGCACGTGTCAAGCAACAGCA
ACGACCGATGACGCCAAATAACAAACTACAGGCAATGTATCCGCAAGGTGCTGATGTGTTGGTCAATCGAGTGGGGTTGG
CTGTTGGTGCTTGGATCAAGCAAAAGCAGCATGCTTATGTGTTACTGCCTGGGCCGCCTAAGGAATTTGTTCCCATGGTT
GATCACGAGTTGTTACCGCATTTGGCTAAGTACAGTGGGCATCACGAAGTTTTGGTCAGTCGCGTGATGCGTTTCTTTGG
CATCGGTGAATCACAATTGGTGACGGATCTCGGCGACTTAATTGCCAAACAGACGAATCCGACACTTGCCACCTACATCA
AAGATCATGAGGTGACCATTCGGGTGACGGCAAGCGGTAAGACCCAAACAGACGCTGACGCAAAACTGGAGCCTGTGATC
GGAACCATTATGGATCGTGAAGGTCGTTATTTTTATGGTTATGGCGATGATAACAGTTTGGTCAAAGAGCTGGTGAAGGC
ATTAGCGGCGACCGATAAGCAAATAACAGCGGCAGAGAGCTTGACTGCCGGTGAATTTCAGGCGGCTTTGGGGGATGTTC
CCGGGGTCTCGAGTTATTTCAAAGGCGGTTTTGTGACGTATTCACTAGCCACGAAAGCAGCGTTTTTGAACATTGATGCA
CGTGAGTTAGCCGCTCATGGGGTGGTTAGTGAATTTACCGCAAAGGCAATGGCCGAACATGCTCGTCAGCGAGCAGCAGC
CGATATTGCAGTCAGTTTTACCGGAGTTGCCGGTCCGGACACGTTGGAAGGGCAACCAGCCGGGACCGTTTGGATAGGAT
TGGCGCGACTTGGACAAGCACCGATCGCACAGGTTTATCATTTTCCCGGTAGTCGTAATGATGTTCGTAAACGGGCCGTG
ATGACAGGTATGATGATGGCACTAAGAAGTTTGCGTGATTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.069

100

0.521
  cinA Streptococcus mutans UA159

51.691

100

0.518
  cinA Streptococcus mitis NCTC 12261

50.831

100

0.518
  cinA Streptococcus pneumoniae TIGR4

50.356

100

0.513
  cinA Streptococcus pneumoniae Rx1

49.881

100

0.508
  cinA Streptococcus pneumoniae R6

49.881

100

0.508
  cinA Streptococcus pneumoniae D39

49.644

100

0.506
  cinA Bacillus subtilis subsp. subtilis str. 168

44.769

99.516

0.446
  cinA Streptococcus suis isolate S10

42.593

91.525

0.39