Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OD459_RS04560 Genome accession   NZ_CP107027
Coordinates   921710..922750 (-) Length   346 a.a.
NCBI ID   WP_048008962.1    Uniprot ID   -
Organism   Cytobacillus firmus strain M7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 916710..927750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD459_RS04540 (OD459_04540) - 917177..918100 (-) 924 WP_048008959.1 dipeptidase -
  OD459_RS04545 (OD459_04545) spoVS 918257..918517 (-) 261 WP_009330666.1 stage V sporulation protein SpoVS -
  OD459_RS04550 (OD459_04550) - 918850..919647 (-) 798 WP_048008960.1 TIGR00282 family metallophosphoesterase -
  OD459_RS04555 (OD459_04555) rny 919777..921339 (-) 1563 WP_048008961.1 ribonuclease Y -
  OD459_RS04560 (OD459_04560) recA 921710..922750 (-) 1041 WP_048008962.1 recombinase RecA Machinery gene
  OD459_RS04565 (OD459_04565) cinA 923024..924274 (-) 1251 WP_048008963.1 competence/damage-inducible protein A Machinery gene
  OD459_RS04570 (OD459_04570) pgsA 924301..924879 (-) 579 WP_035330725.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OD459_RS04575 (OD459_04575) - 925390..926295 (-) 906 WP_048008964.1 helix-turn-helix domain-containing protein -
  OD459_RS04580 (OD459_04580) - 926317..927108 (-) 792 WP_035330727.1 YmfK family protein -
  OD459_RS04585 (OD459_04585) - 927342..927599 (-) 258 WP_048008965.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37631.89 Da        Isoelectric Point: 4.9253

>NTDB_id=737423 OD459_RS04560 WP_048008962.1 921710..922750(-) (recA) [Cytobacillus firmus strain M7]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQTDRRISTVPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQASGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDILVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGIMFGNPETTPGGRALKFYSSIRLEVRRAETLKQGNEMVGNKT
KIKIVKNKVAPPFRVAEVDIMYGEGISKEGEIIDLGSELDIVQKSGSWYSFNEERLGQGRENAKVFLKENPEIRLTIQKQ
IREHYGLDEEKVASGDEGQEEFELID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=737423 OD459_RS04560 WP_048008962.1 921710..922750(-) (recA) [Cytobacillus firmus strain M7]
GTGAGTGATCGTCAAGCAGCACTTGAAATGGCGTTAAAACAAATAGAAAAGCAATTTGGTAAAGGTTCTATCATGAAGCT
CGGGGAACAGACTGACCGCAGAATTTCCACTGTACCAAGCGGATCTCTTGCTCTTGATGCAGCTCTTGGGGTAGGCGGCT
ATCCAAGAGGACGTATTATTGAAGTATATGGACCGGAGAGCTCAGGTAAAACAACAGTAGCCCTGCATGCTATTGCAGAA
GTTCAGGCAAGCGGCGGACAAGCAGCGTTTATCGATGCCGAACACGCCTTAGACCCTGTTTATGCACAAAAACTTGGTGT
GAATATTGACGAACTTCTTCTTTCTCAGCCGGATACCGGGGAGCAGGCGCTTGAAATTGCAGAAGCCCTTGTTCGAAGCG
GTGCTATTGATATTCTCGTAGTTGACTCTGTGGCAGCCCTTGTTCCCAAGGCTGAAATTGAAGGAGAAATGGGTGACTCC
CATGTGGGTCTGCAGGCCCGCCTTATGTCACAGGCACTTCGTAAGCTATCAGGCGCAATCAACAAATCAAAGACAATCGC
AATTTTCATTAACCAAATCCGTGAAAAAATCGGAATTATGTTTGGAAACCCTGAGACGACTCCAGGGGGACGCGCATTGA
AATTCTACTCTTCCATCCGCCTTGAAGTGCGCCGTGCAGAAACTCTTAAACAAGGCAATGAAATGGTTGGTAATAAGACA
AAGATTAAAATTGTCAAAAATAAAGTCGCTCCTCCATTCCGAGTGGCGGAAGTTGACATCATGTACGGTGAAGGAATCTC
CAAGGAAGGTGAAATCATCGATCTTGGCTCTGAGCTGGATATTGTCCAAAAGAGCGGTTCATGGTACTCATTCAACGAGG
AGCGCTTAGGCCAAGGCCGTGAAAACGCCAAGGTATTCCTAAAAGAAAACCCTGAAATCCGCCTGACTATCCAAAAACAA
ATCCGCGAACATTATGGACTTGATGAAGAAAAAGTAGCCAGTGGAGACGAAGGGCAGGAAGAATTCGAGCTGATCGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

90.361

95.954

0.867
  recA Latilactobacillus sakei subsp. sakei 23K

73.394

94.509

0.694
  recA Streptococcus pneumoniae D39

67.059

98.266

0.659
  recA Streptococcus pneumoniae Rx1

67.059

98.266

0.659
  recA Streptococcus pneumoniae R6

67.059

98.266

0.659
  recA Streptococcus pneumoniae TIGR4

67.059

98.266

0.659
  recA Streptococcus mitis NCTC 12261

67.062

97.399

0.653
  recA Streptococcus mutans UA159

67.47

95.954

0.647
  recA Streptococcus mitis SK321

67.273

95.376

0.642
  recA Streptococcus pyogenes NZ131

66.159

94.798

0.627
  recA Lactococcus lactis subsp. cremoris KW2

64.095

97.399

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.865

98.844

0.621
  recA Neisseria gonorrhoeae MS11

65.443

94.509

0.618
  recA Neisseria gonorrhoeae MS11

65.443

94.509

0.618
  recA Neisseria gonorrhoeae strain FA1090

65.443

94.509

0.618
  recA Helicobacter pylori 26695

61.988

98.844

0.613
  recA Helicobacter pylori strain NCTC11637

61.988

98.844

0.613
  recA Vibrio cholerae strain A1552

65.109

92.775

0.604
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.109

92.775

0.604
  recA Ralstonia pseudosolanacearum GMI1000

66.454

90.462

0.601
  recA Acinetobacter baylyi ADP1

60

99.711

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

94.509

0.592
  recA Glaesserella parasuis strain SC1401

63.323

92.197

0.584
  recA Acinetobacter baumannii D1279779

62.733

93.064

0.584
  recA Pseudomonas stutzeri DSM 10701

62.813

92.486

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

92.486

0.566