Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   OD459_RS04565 Genome accession   NZ_CP107027
Coordinates   923024..924274 (-) Length   416 a.a.
NCBI ID   WP_048008963.1    Uniprot ID   A0AA46SK90
Organism   Cytobacillus firmus strain M7     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 918024..929274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD459_RS04545 (OD459_04545) spoVS 918257..918517 (-) 261 WP_009330666.1 stage V sporulation protein SpoVS -
  OD459_RS04550 (OD459_04550) - 918850..919647 (-) 798 WP_048008960.1 TIGR00282 family metallophosphoesterase -
  OD459_RS04555 (OD459_04555) rny 919777..921339 (-) 1563 WP_048008961.1 ribonuclease Y -
  OD459_RS04560 (OD459_04560) recA 921710..922750 (-) 1041 WP_048008962.1 recombinase RecA Machinery gene
  OD459_RS04565 (OD459_04565) cinA 923024..924274 (-) 1251 WP_048008963.1 competence/damage-inducible protein A Machinery gene
  OD459_RS04570 (OD459_04570) pgsA 924301..924879 (-) 579 WP_035330725.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OD459_RS04575 (OD459_04575) - 925390..926295 (-) 906 WP_048008964.1 helix-turn-helix domain-containing protein -
  OD459_RS04580 (OD459_04580) - 926317..927108 (-) 792 WP_035330727.1 YmfK family protein -
  OD459_RS04585 (OD459_04585) - 927342..927599 (-) 258 WP_048008965.1 DUF3243 domain-containing protein -
  OD459_RS04590 (OD459_04590) ymfI 927715..928437 (-) 723 WP_048008966.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45354.94 Da        Isoelectric Point: 4.8718

>NTDB_id=737424 OD459_RS04565 WP_048008963.1 923024..924274(-) (cinA) [Cytobacillus firmus strain M7]
MNAEIIAVGSELLLGQIVNTNARFLSRQLAELGINVFYHTVVGDNPKRLRSVIKIAESRSDLIVFTGGLGPTKDDLTKET
IARHLGKELVMDEQALESIQLYFKRTNREMTENNKKQALVLEDAQVLPNEHGMAPGMIADSGRHVFMLLPGPPNEMEPMF
LKHAFPALQSKLGTEDVIVSRVLHFFGIGEAMLETEIEDIIDAQSNPTIAPLASDGEVTLRVTAKHSQPNTAMMLINEAE
TKILERVGEYFYGYDDTSLMYELTKLIKESSMTISAAESLTGGMFQEEFTSIPGAGGLLKGGVVCYTNEVKAEVLKVRKE
TIDNDGVVSAQCAAELAENVASLTNADIGISFTGVAGPDELEGNPVGTVYIGIWIKGRPVQTEKLNLGGTRAANRVRTVK
YGCHFLIKALKETQNA

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=737424 OD459_RS04565 WP_048008963.1 923024..924274(-) (cinA) [Cytobacillus firmus strain M7]
ATGAATGCTGAAATTATTGCTGTCGGGTCTGAGCTTTTGCTTGGACAAATCGTTAATACAAATGCCCGCTTTCTTTCCCG
GCAGCTTGCTGAACTGGGCATTAACGTTTTTTACCATACAGTGGTTGGAGATAACCCAAAGCGCCTGAGATCGGTGATCA
AAATAGCCGAAAGCCGTTCTGATTTGATCGTCTTCACGGGCGGCCTGGGACCGACAAAGGATGATTTAACAAAAGAAACG
ATTGCCCGCCATCTTGGCAAAGAGCTCGTCATGGACGAACAGGCGCTTGAATCTATACAGCTTTATTTTAAACGCACCAA
CAGAGAGATGACTGAGAATAATAAAAAACAGGCCCTGGTTCTTGAGGATGCACAGGTGCTTCCTAATGAGCATGGAATGG
CACCCGGAATGATTGCCGATAGTGGCCGGCATGTTTTCATGCTTCTTCCGGGGCCGCCAAACGAGATGGAGCCGATGTTC
CTTAAACATGCCTTTCCAGCCCTGCAATCCAAGCTGGGAACCGAGGATGTAATTGTTTCCCGGGTGCTGCACTTCTTCGG
GATTGGAGAAGCCATGCTGGAAACGGAGATTGAAGATATTATTGATGCTCAGAGCAATCCAACCATTGCCCCGCTTGCTT
CTGATGGGGAAGTTACTCTGAGGGTCACAGCAAAGCATAGTCAGCCTAACACGGCCATGATGCTGATTAATGAAGCTGAA
ACTAAAATTCTGGAGCGTGTCGGCGAATACTTCTATGGCTATGATGATACTTCCCTGATGTATGAGCTCACCAAGCTGAT
TAAGGAGAGCAGCATGACTATTTCGGCAGCGGAGAGTTTAACAGGCGGCATGTTCCAGGAAGAGTTTACATCCATTCCGG
GAGCCGGCGGACTTTTAAAGGGCGGAGTGGTCTGCTACACAAACGAAGTTAAGGCTGAAGTATTAAAAGTCCGCAAAGAA
ACGATTGATAACGACGGGGTTGTCAGTGCACAGTGTGCTGCCGAGCTTGCTGAGAATGTCGCAAGCCTTACAAATGCCGA
TATCGGTATCAGCTTCACAGGTGTTGCCGGTCCGGATGAATTGGAAGGCAACCCTGTCGGTACAGTATATATAGGCATTT
GGATAAAAGGAAGGCCGGTGCAGACCGAAAAGCTGAACCTTGGAGGTACCAGGGCAGCCAATCGGGTTCGTACAGTAAAA
TACGGCTGCCATTTTCTTATTAAAGCATTAAAAGAAACTCAGAACGCTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.976

98.558

0.601
  cinA Streptococcus mitis SK321

46.19

100

0.466
  cinA Streptococcus pneumoniae TIGR4

45.714

100

0.462
  cinA Streptococcus mitis NCTC 12261

45.714

100

0.462
  cinA Streptococcus pneumoniae Rx1

45.238

100

0.457
  cinA Streptococcus pneumoniae R6

45.238

100

0.457
  cinA Streptococcus pneumoniae D39

45

100

0.454
  cinA Streptococcus mutans UA159

45.107

100

0.454
  cinA Streptococcus suis isolate S10

38.677

94.471

0.365