Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N8I82_RS03655 Genome accession   NZ_CP106751
Coordinates   720013..721059 (+) Length   348 a.a.
NCBI ID   WP_048712013.1    Uniprot ID   A0AAX0ITU6
Organism   Granulicatella adiacens strain KHUD_009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 715013..726059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I82_RS03615 (N8I82_03615) comGC 715177..715482 (+) 306 WP_065427295.1 competence type IV pilus major pilin ComGC -
  N8I82_RS03620 (N8I82_03620) comGD 715485..715913 (+) 429 WP_049554718.1 competence type IV pilus minor pilin ComGD -
  N8I82_RS03625 (N8I82_03625) - 715891..716256 (+) 366 WP_049554717.1 hypothetical protein -
  N8I82_RS03630 (N8I82_03630) - 716216..716728 (+) 513 WP_263090897.1 hypothetical protein -
  N8I82_RS03635 (N8I82_03635) - 716715..717065 (+) 351 WP_204703656.1 hypothetical protein -
  N8I82_RS03640 (N8I82_03640) - 717152..717997 (+) 846 WP_223429376.1 helix-turn-helix domain-containing protein -
  N8I82_RS03645 (N8I82_03645) pgsA 718008..718601 (+) 594 WP_039848732.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N8I82_RS03650 (N8I82_03650) cinA 718674..719927 (+) 1254 WP_049554713.1 competence/damage-inducible protein A Machinery gene
  N8I82_RS03655 (N8I82_03655) recA 720013..721059 (+) 1047 WP_048712013.1 recombinase RecA Machinery gene
  N8I82_RS03660 (N8I82_03660) - 721161..721691 (+) 531 WP_263089708.1 transposase -
  N8I82_RS03665 (N8I82_03665) - 721670..722521 (+) 852 WP_244266393.1 IS3 family transposase -
  N8I82_RS03670 (N8I82_03670) - 722683..724353 (+) 1671 WP_259949312.1 polysaccharide biosynthesis protein -
  N8I82_RS03675 (N8I82_03675) - 724353..725069 (+) 717 WP_259949314.1 pseudouridine synthase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37191.42 Da        Isoelectric Point: 5.3110

>NTDB_id=734428 N8I82_RS03655 WP_048712013.1 720013..721059(+) (recA) [Granulicatella adiacens strain KHUD_009]
MAENENRQRALEDALKKIEKSYGKGAVMKLGEKVDTQIQTVSSGSLALDIALGVGGFPRGRIIEVYGPESSGKTTVALHA
VAEVQKRGGVAAFIDAEHALDPEYAKALGVNIDELLLSQPDTGEQGLGIADALVSSGAVDIVIVDSVAALVPRAEIDGDM
GQSHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRADQIKQGTEILG
NQTKIKVVKNKVAPPFKTAVVDIMYGEGISQLGELLDMAADLDFVKKSGAWYAYNDEKIGQGRENAKAYLADHPEVVADL
NQKVRAHYGIGVAAPVEVEEEGQTSLLD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=734428 N8I82_RS03655 WP_048712013.1 720013..721059(+) (recA) [Granulicatella adiacens strain KHUD_009]
ATGGCAGAAAATGAAAATCGTCAAAGAGCATTGGAAGATGCGTTAAAGAAAATTGAAAAGAGCTACGGTAAAGGTGCCGT
AATGAAATTAGGAGAAAAAGTAGATACACAAATCCAAACAGTATCTTCAGGGTCTCTTGCATTAGATATCGCATTAGGCG
TAGGTGGGTTCCCACGTGGACGTATCATCGAAGTATACGGACCAGAATCATCAGGTAAAACAACTGTTGCACTTCATGCG
GTTGCAGAAGTTCAAAAACGTGGTGGAGTAGCAGCGTTTATCGATGCTGAGCATGCTCTAGATCCAGAATACGCAAAAGC
TTTAGGCGTAAACATTGATGAATTACTATTATCTCAACCAGATACAGGGGAACAAGGATTAGGAATTGCAGATGCGTTAG
TATCATCAGGAGCCGTTGACATTGTGATCGTTGACTCAGTTGCTGCGTTAGTTCCACGTGCCGAAATCGATGGCGACATG
GGACAATCACACGTAGGTCTGCAAGCTCGTTTAATGTCTCAAGCACTACGTAAGTTATCAGGTTCTATTAACAAAACAAA
AACAATCGCAATCTTTATCAACCAAATCCGTGAAAAAGTAGGCGTTATGTTCGGAAATCCTGAGACAACACCTGGTGGAC
GTGCGTTAAAATTCTACGCGACAGTTCGTTTAGAAGTACGTCGTGCTGATCAAATCAAACAAGGTACTGAAATCTTAGGG
AACCAAACTAAAATCAAAGTTGTTAAAAACAAAGTGGCTCCACCATTTAAAACAGCTGTTGTGGATATCATGTACGGAGA
AGGGATTTCTCAACTTGGGGAATTACTCGATATGGCTGCAGACCTTGACTTCGTGAAGAAGAGTGGTGCATGGTACGCTT
ATAACGACGAGAAGATTGGTCAAGGTCGTGAGAATGCAAAAGCATACTTGGCAGACCATCCAGAAGTCGTTGCCGACTTG
AACCAAAAAGTTCGTGCTCACTATGGCATTGGAGTAGCAGCTCCTGTTGAAGTGGAAGAAGAAGGACAAACAAGTTTATT
AGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

77.879

94.828

0.739
  recA Bacillus subtilis subsp. subtilis str. 168

75.692

93.391

0.707
  recA Streptococcus mitis SK321

74.39

94.253

0.701
  recA Streptococcus pneumoniae Rx1

74.085

94.253

0.698
  recA Streptococcus pneumoniae D39

74.085

94.253

0.698
  recA Streptococcus pneumoniae R6

74.085

94.253

0.698
  recA Streptococcus pneumoniae TIGR4

74.085

94.253

0.698
  recA Streptococcus pyogenes NZ131

73.556

94.54

0.695
  recA Streptococcus mitis NCTC 12261

73.78

94.253

0.695
  recA Streptococcus mutans UA159

72.727

94.828

0.69
  recA Lactococcus lactis subsp. cremoris KW2

70.732

94.253

0.667
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.805

94.253

0.592
  recA Glaesserella parasuis strain SC1401

63.158

92.816

0.586
  recA Neisseria gonorrhoeae strain FA1090

62.195

94.253

0.586
  recA Neisseria gonorrhoeae MS11

62.195

94.253

0.586
  recA Neisseria gonorrhoeae MS11

62.195

94.253

0.586
  recA Acinetobacter baumannii D1279779

58.261

99.138

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

92.816

0.575
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

92.529

0.569
  recA Vibrio cholerae strain A1552

61.491

92.529

0.569
  recA Ralstonia pseudosolanacearum GMI1000

61.111

93.103

0.569
  recA Helicobacter pylori 26695

59.394

94.828

0.563
  recA Helicobacter pylori strain NCTC11637

59.394

94.828

0.563
  recA Pseudomonas stutzeri DSM 10701

60.681

92.816

0.563
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.451

94.253

0.56
  recA Acinetobacter baylyi ADP1

59.938

92.529

0.555