Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   N8I82_RS03650 Genome accession   NZ_CP106751
Coordinates   718674..719927 (+) Length   417 a.a.
NCBI ID   WP_049554713.1    Uniprot ID   -
Organism   Granulicatella adiacens strain KHUD_009     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 713674..724927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I82_RS03610 (N8I82_03610) comGB 714198..715175 (+) 978 WP_263090894.1 competence type IV pilus assembly protein ComGB -
  N8I82_RS03615 (N8I82_03615) comGC 715177..715482 (+) 306 WP_065427295.1 competence type IV pilus major pilin ComGC -
  N8I82_RS03620 (N8I82_03620) comGD 715485..715913 (+) 429 WP_049554718.1 competence type IV pilus minor pilin ComGD -
  N8I82_RS03625 (N8I82_03625) - 715891..716256 (+) 366 WP_049554717.1 hypothetical protein -
  N8I82_RS03630 (N8I82_03630) - 716216..716728 (+) 513 WP_263090897.1 hypothetical protein -
  N8I82_RS03635 (N8I82_03635) - 716715..717065 (+) 351 WP_204703656.1 hypothetical protein -
  N8I82_RS03640 (N8I82_03640) - 717152..717997 (+) 846 WP_223429376.1 helix-turn-helix domain-containing protein -
  N8I82_RS03645 (N8I82_03645) pgsA 718008..718601 (+) 594 WP_039848732.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N8I82_RS03650 (N8I82_03650) cinA 718674..719927 (+) 1254 WP_049554713.1 competence/damage-inducible protein A Machinery gene
  N8I82_RS03655 (N8I82_03655) recA 720013..721059 (+) 1047 WP_048712013.1 recombinase RecA Machinery gene
  N8I82_RS03660 (N8I82_03660) - 721161..721691 (+) 531 WP_263089708.1 transposase -
  N8I82_RS03665 (N8I82_03665) - 721670..722521 (+) 852 WP_244266393.1 IS3 family transposase -
  N8I82_RS03670 (N8I82_03670) - 722683..724353 (+) 1671 WP_259949312.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 46257.64 Da        Isoelectric Point: 4.7262

>NTDB_id=734427 N8I82_RS03650 WP_049554713.1 718674..719927(+) (cinA) [Granulicatella adiacens strain KHUD_009]
MNAEIIAVGTELLMGQIVNTNSAYLAQELAKNSIPTYYQQVVGDNEERMVEAIELAASRSDLIILSGGLGPTTDDITKQV
LARFLEVPLVEDKKALQKVIEFHVRSHRDMSENNRRQALAFEGGTVFKNHNGLAVGCGFEKDGRQFIVLPGPPNELKMMM
QKEVLPFLRKKVGKVDLFESRYLRFFGIGESRLVTILENLIEEQTNPTIAPYAGKFEVMLRLTANGETEEECRDLLDGME
LLIQSQVGEFFYGYGDHNTLQEVTVDLLKESGLTIACAESLTGGLFAASVVAFEGSSSYFQGGTVAYQREAKETQLGIDS
TLLDQYGMVSAECAKAMAEQARLHYQSDLGISFTGVAGPSEMEGKEVGTIFVALASQSDVEVLELHLARNRNDNREFAVQ
HGWNLLRKYFLKQVRTK

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=734427 N8I82_RS03650 WP_049554713.1 718674..719927(+) (cinA) [Granulicatella adiacens strain KHUD_009]
ATGAATGCGGAAATTATAGCAGTCGGAACTGAACTACTTATGGGTCAAATTGTAAATACGAATAGCGCGTATTTAGCTCA
AGAATTGGCGAAAAATTCGATTCCAACTTACTATCAACAAGTAGTTGGCGATAATGAAGAAAGAATGGTTGAAGCGATTG
AATTGGCTGCTTCAAGAAGTGATTTGATTATTCTCTCTGGCGGACTTGGGCCAACAACAGATGATATTACCAAGCAAGTA
TTGGCGCGCTTTTTAGAAGTGCCCCTAGTTGAAGATAAAAAAGCTCTTCAAAAAGTGATTGAGTTTCATGTGCGTTCTCA
TAGGGATATGAGTGAAAATAATCGTAGACAGGCATTAGCCTTTGAAGGTGGAACGGTTTTTAAAAATCATAACGGACTTG
CAGTAGGGTGCGGTTTTGAAAAAGATGGCCGACAATTCATTGTTTTACCTGGACCACCAAATGAATTGAAAATGATGATG
CAAAAAGAAGTGTTGCCTTTCTTACGTAAGAAAGTGGGCAAAGTGGATTTATTTGAATCACGTTACTTACGCTTCTTTGG
AATTGGAGAATCACGCTTAGTAACCATTTTAGAAAATCTAATTGAAGAACAAACAAATCCGACGATTGCACCATATGCTG
GTAAATTTGAAGTAATGCTTCGTTTAACGGCCAATGGTGAAACAGAAGAAGAGTGCAGAGATCTTCTTGATGGAATGGAA
CTACTTATCCAATCGCAAGTAGGAGAATTTTTCTATGGATACGGGGACCACAATACATTACAAGAAGTCACTGTTGATTT
ACTAAAAGAATCAGGTCTTACGATTGCTTGCGCTGAAAGTTTAACGGGTGGATTGTTTGCAGCAAGTGTCGTTGCCTTTG
AAGGAAGCTCATCCTACTTCCAAGGAGGAACAGTCGCTTATCAAAGAGAAGCGAAAGAAACGCAACTAGGAATCGATAGT
ACCTTGCTGGATCAATACGGAATGGTTAGTGCAGAATGTGCCAAGGCCATGGCGGAACAAGCAAGACTCCATTATCAAAG
TGATTTAGGCATTTCATTTACGGGAGTTGCAGGGCCAAGTGAAATGGAAGGAAAAGAAGTCGGAACGATTTTCGTCGCAT
TAGCTTCTCAATCAGACGTAGAAGTTCTTGAATTACACCTTGCACGTAATCGTAACGATAATCGTGAATTCGCAGTACAA
CATGGATGGAATTTACTCAGAAAATATTTTTTAAAACAAGTTCGAACAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

49.286

100

0.496
  cinA Streptococcus pneumoniae Rx1

49.048

100

0.494
  cinA Streptococcus pneumoniae R6

49.048

100

0.494
  cinA Streptococcus pneumoniae D39

48.81

100

0.492
  cinA Streptococcus mitis SK321

48.095

100

0.484
  cinA Streptococcus mutans UA159

48.441

100

0.484
  cinA Streptococcus mitis NCTC 12261

47.857

100

0.482
  cinA Bacillus subtilis subsp. subtilis str. 168

46.552

97.362

0.453
  cinA Streptococcus suis isolate S10

39.903

98.561

0.393