Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N5A89_RS10440 Genome accession   NZ_CP104714
Coordinates   2300137..2301273 (-) Length   378 a.a.
NCBI ID   WP_152705918.1    Uniprot ID   -
Organism   Lactiplantibacillus pentosus strain 68-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2295137..2306273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5A89_RS10430 (N5A89_10430) - 2297417..2298223 (-) 807 WP_050339348.1 TIGR00282 family metallophosphoesterase -
  N5A89_RS10435 (N5A89_10435) rny 2298347..2299906 (-) 1560 WP_050339349.1 ribonuclease Y -
  N5A89_RS10440 (N5A89_10440) recA 2300137..2301273 (-) 1137 WP_152705918.1 recombinase RecA Machinery gene
  N5A89_RS10445 (N5A89_10445) cinA 2301365..2302627 (-) 1263 WP_122211835.1 competence/damage-inducible protein A Machinery gene
  N5A89_RS10450 (N5A89_10450) pgsA 2303091..2303675 (-) 585 WP_003639171.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N5A89_RS10455 (N5A89_10455) - 2303698..2304570 (-) 873 WP_152705919.1 helix-turn-helix domain-containing protein -
  N5A89_RS10460 (N5A89_10460) yfmH 2304674..2305975 (-) 1302 WP_050339354.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40732.10 Da        Isoelectric Point: 5.3884

>NTDB_id=731496 N5A89_RS10440 WP_152705918.1 2300137..2301273(-) (recA) [Lactiplantibacillus pentosus strain 68-1]
MADARKAALDTALKKIEKNFGKGAIMRMGDAAQTTISTISSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNR
VRIKVVKNKVAPPFKRAEVDIMYGQGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRENAKKYLDEHPDVMAEIRQ
KVRDAYGMDQTGEEDEQADDKSKDKVTKPSDKSQAQAKPKKPVATETSLDLDDSKTDK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=731496 N5A89_RS10440 WP_152705918.1 2300137..2301273(-) (recA) [Lactiplantibacillus pentosus strain 68-1]
TTGGCTGATGCACGGAAAGCAGCACTAGATACTGCCCTAAAAAAGATCGAAAAGAACTTTGGTAAAGGGGCGATTATGCG
GATGGGTGACGCTGCCCAGACGACCATTTCAACAATTTCCAGCGGGTCACTAGCCTTAGATGACGCATTAGGCGTTGGTG
GTTACCCACGTGGCCGAATCGTTGAAATTTATGGCCCTGAAAGTTCCGGTAAAACGACCGTTGCACTACACGCGGTCGCT
GAAGTTCAAAAGCAAGGCGGGACGGCCGCCTATATCGATGCTGAAAACGCCTTGGATCCGGTTTACGCGGAACATTTAGG
TGTCAACATTGATGATTTGTTACTTTCACAACCAGATACTGGTGAACAAGGTCTTGAAATCGCGGATGCCTTAGTTTCCA
GTGGCGCGGTTGATATCTTAGTTGTCGATTCAGTTGCGGCGTTAGTACCACGGGCCGAAATTGAAGGTGAAATGGGTGAC
GCCCACGTTGGGTTACAAGCCCGGTTAATGTCACAAGCGTTGCGGAAGTTATCCGGGACCTTGAACAAGACAAAGACCAT
CGCACTATTTATTAACCAAATTCGTGAAAAAGTTGGCGTGATGTTTGGGAACCCTGAAACGACCCCTGGTGGTCGGGCTC
TGAAGTTCTATGCGACGATTCGACTTGAAGTTCGTCGTGCTGAACAAATCAAGGAAGGAACCAACATCATTGGGAACCGT
GTTCGGATCAAAGTTGTGAAGAACAAGGTTGCGCCGCCATTTAAGCGGGCCGAAGTTGATATCATGTACGGTCAAGGGAT
CTCACAAACCGGTGAAATTGTTGATATGGCCGCTGAAAAGGATATTGTTAAGAAGAGTGGTTCATGGTATTCATACGGTG
ATGACCGGATTGGTCAAGGTCGTGAGAATGCGAAGAAGTACTTGGATGAACATCCAGATGTCATGGCTGAGATTCGTCAA
AAAGTCCGGGATGCATACGGCATGGACCAGACGGGTGAAGAAGACGAGCAAGCTGATGACAAGTCCAAGGATAAGGTCAC
TAAACCCAGTGACAAGTCACAGGCACAAGCCAAGCCTAAAAAGCCAGTTGCAACTGAAACATCTTTAGATCTTGATGATT
CAAAAACCGATAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

85.886

88.095

0.757
  recA Bacillus subtilis subsp. subtilis str. 168

74.699

87.831

0.656
  recA Streptococcus pneumoniae Rx1

64.439

98.942

0.638
  recA Streptococcus pneumoniae D39

64.439

98.942

0.638
  recA Streptococcus pneumoniae R6

64.439

98.942

0.638
  recA Streptococcus pneumoniae TIGR4

64.439

98.942

0.638
  recA Streptococcus mitis SK321

64.171

98.942

0.635
  recA Streptococcus mutans UA159

66.189

92.328

0.611
  recA Streptococcus pyogenes NZ131

69.277

87.831

0.608
  recA Streptococcus mitis NCTC 12261

68.997

87.037

0.601
  recA Lactococcus lactis subsp. cremoris KW2

69.207

86.772

0.601
  recA Ralstonia pseudosolanacearum GMI1000

61.584

90.212

0.556
  recA Vibrio cholerae strain A1552

59.884

91.005

0.545
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.884

91.005

0.545
  recA Neisseria gonorrhoeae MS11

60.588

89.947

0.545
  recA Neisseria gonorrhoeae MS11

60.588

89.947

0.545
  recA Neisseria gonorrhoeae strain FA1090

60.588

89.947

0.545
  recA Pseudomonas stutzeri DSM 10701

62.539

85.45

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

85.979

0.534
  recA Acinetobacter baylyi ADP1

58.892

90.741

0.534
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.726

90.741

0.524
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

86.772

0.521
  recA Acinetobacter baumannii D1279779

59.877

85.714

0.513
  recA Glaesserella parasuis strain SC1401

60.248

85.185

0.513
  recA Helicobacter pylori 26695

58.41

86.508

0.505
  recA Helicobacter pylori strain NCTC11637

58.41

86.508

0.505