Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   N5A89_RS10445 Genome accession   NZ_CP104714
Coordinates   2301365..2302627 (-) Length   420 a.a.
NCBI ID   WP_122211835.1    Uniprot ID   A0AB37RJH8
Organism   Lactiplantibacillus pentosus strain 68-1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2296365..2307627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5A89_RS10430 (N5A89_10430) - 2297417..2298223 (-) 807 WP_050339348.1 TIGR00282 family metallophosphoesterase -
  N5A89_RS10435 (N5A89_10435) rny 2298347..2299906 (-) 1560 WP_050339349.1 ribonuclease Y -
  N5A89_RS10440 (N5A89_10440) recA 2300137..2301273 (-) 1137 WP_152705918.1 recombinase RecA Machinery gene
  N5A89_RS10445 (N5A89_10445) cinA 2301365..2302627 (-) 1263 WP_122211835.1 competence/damage-inducible protein A Machinery gene
  N5A89_RS10450 (N5A89_10450) pgsA 2303091..2303675 (-) 585 WP_003639171.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N5A89_RS10455 (N5A89_10455) - 2303698..2304570 (-) 873 WP_152705919.1 helix-turn-helix domain-containing protein -
  N5A89_RS10460 (N5A89_10460) yfmH 2304674..2305975 (-) 1302 WP_050339354.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  N5A89_RS10465 (N5A89_10465) yfmF 2305972..2307237 (-) 1266 WP_152705920.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45036.99 Da        Isoelectric Point: 5.0535

>NTDB_id=731497 N5A89_RS10445 WP_122211835.1 2301365..2302627(-) (cinA) [Lactiplantibacillus pentosus strain 68-1]
MQAEIIAVGTEILLGQITNTNSTHIARGLAELGIDSYYQTVVGDNPQRLSAVIEIAAQRNDLVILTGGLGPTADDLTKQT
LAHYLNVPLVEDAAAMQKITDWFAKNEQVMTANNRQQALYPQGAQPLVNHNGMAVGAFYQSSDSADFLLLPGPPRELAVM
FDREAKPKLAAAYGDQAQIYSRVMRFYGITESALATKLQPLIDNQTAVTIAPYAKTNEVTLRLSAQAETESAAKAAIDQV
DQQIKTLIGRYFYGYGDDNSLVNVVVKQLIDANLSITAAESLTAGLFQSTLGSVSGVSAVFPGGFVTYANEVKHQLVNVP
QDIIDTDGVVSEATAKAMALGAQQQLQTDVAVSFTGVAGPDKLEGQPAGTVWIGLAYRQQAPIAQQFHFAGGRQRIRQRS
VMAGLDLLRHALSSDSTLKK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=731497 N5A89_RS10445 WP_122211835.1 2301365..2302627(-) (cinA) [Lactiplantibacillus pentosus strain 68-1]
ATGCAGGCAGAGATAATCGCGGTCGGCACCGAGATTTTATTAGGACAAATCACGAATACGAACAGTACGCACATTGCACG
TGGACTGGCTGAGTTAGGCATTGACAGTTACTATCAGACGGTGGTGGGTGATAATCCGCAACGGCTGTCAGCGGTAATTG
AAATTGCGGCGCAACGTAATGATTTAGTGATTTTAACGGGTGGTCTCGGACCGACTGCGGATGATTTAACGAAGCAGACA
TTGGCACATTATTTAAATGTACCGTTAGTCGAAGATGCAGCAGCAATGCAAAAAATCACCGACTGGTTTGCAAAAAATGA
ACAGGTCATGACCGCTAACAACCGGCAACAGGCACTGTATCCGCAAGGCGCTCAGCCGTTAGTCAATCATAACGGCATGG
CGGTCGGTGCGTTTTATCAATCGTCTGACAGTGCGGATTTCTTATTGTTGCCAGGACCACCACGTGAGTTAGCGGTGATG
TTTGACCGGGAAGCTAAGCCGAAGCTGGCAGCAGCTTATGGCGACCAGGCTCAGATTTATTCGCGGGTGATGCGATTCTA
CGGGATAACCGAATCGGCACTTGCGACCAAGTTACAACCGCTAATTGACAATCAGACGGCGGTGACGATTGCACCGTATG
CCAAGACGAATGAAGTGACCTTACGTTTGAGTGCCCAGGCTGAGACTGAGTCGGCTGCCAAAGCGGCGATCGACCAAGTT
GACCAACAGATCAAAACGTTGATTGGACGCTATTTCTATGGCTACGGTGATGATAATTCATTGGTCAACGTGGTGGTTAA
ACAGCTGATTGATGCTAACTTGAGCATTACGGCCGCCGAAAGCTTAACCGCTGGCCTGTTTCAGAGTACCCTTGGGAGCG
TGTCAGGTGTTTCGGCAGTTTTTCCAGGTGGCTTTGTGACGTATGCAAATGAAGTTAAGCATCAGCTGGTTAATGTGCCT
CAAGACATCATTGATACCGATGGGGTAGTGTCCGAGGCCACCGCTAAAGCCATGGCTTTAGGCGCACAACAGCAGCTACA
GACGGACGTTGCCGTCAGTTTCACCGGTGTTGCAGGTCCCGATAAGCTAGAAGGGCAACCGGCTGGCACGGTTTGGATTG
GCTTAGCTTATCGGCAGCAAGCACCAATTGCCCAGCAATTCCACTTTGCTGGGGGACGACAACGTATTCGTCAGCGCAGC
GTGATGGCCGGATTAGACCTATTACGGCATGCATTGTCGTCGGATTCGACACTGAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

49.533

100

0.505
  cinA Streptococcus pneumoniae TIGR4

49.647

100

0.502
  cinA Streptococcus pneumoniae Rx1

49.647

100

0.502
  cinA Streptococcus pneumoniae R6

49.647

100

0.502
  cinA Streptococcus pneumoniae D39

49.412

100

0.5
  cinA Streptococcus mitis NCTC 12261

49.065

100

0.5
  cinA Streptococcus mutans UA159

48.463

100

0.488
  cinA Bacillus subtilis subsp. subtilis str. 168

45.946

96.905

0.445
  cinA Streptococcus suis isolate S10

40.528

99.286

0.402