Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N5C46_RS04580 Genome accession   NZ_CP104558
Coordinates   878437..879474 (-) Length   345 a.a.
NCBI ID   WP_034760069.1    Uniprot ID   A0A6I6UEU7
Organism   Rossellomorea vietnamensis strain RL-WG62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 873437..884474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5C46_RS04560 (N5C46_04560) - 874042..874965 (-) 924 WP_261751116.1 dipeptidase -
  N5C46_RS04565 (N5C46_04565) spoVS 875067..875327 (-) 261 WP_034760060.1 stage V sporulation protein SpoVS -
  N5C46_RS04570 (N5C46_04570) - 875464..876267 (-) 804 WP_061809970.1 TIGR00282 family metallophosphoesterase -
  N5C46_RS04575 (N5C46_04575) rny 876433..877992 (-) 1560 WP_034760066.1 ribonuclease Y -
  N5C46_RS04580 (N5C46_04580) recA 878437..879474 (-) 1038 WP_034760069.1 recombinase RecA Machinery gene
  N5C46_RS04585 (N5C46_04585) cinA 879672..880907 (-) 1236 WP_261751117.1 competence/damage-inducible protein A Machinery gene
  N5C46_RS04590 (N5C46_04590) pgsA 880979..881557 (-) 579 WP_034760074.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N5C46_RS04595 (N5C46_04595) - 881639..882535 (-) 897 WP_261751118.1 helix-turn-helix domain-containing protein -
  N5C46_RS04600 (N5C46_04600) - 882555..883346 (-) 792 WP_034760078.1 DUF3388 domain-containing protein -
  N5C46_RS04605 (N5C46_04605) - 883568..883825 (-) 258 WP_034760081.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37376.61 Da        Isoelectric Point: 5.0035

>NTDB_id=730496 N5C46_RS04580 WP_034760069.1 878437..879474(-) (recA) [Rossellomorea vietnamensis strain RL-WG62]
MSDRKAALDMALKQIEKQFGKGSIMKLGEKTDRNVVTCPSGSLALDAALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAQGGQAAFIDAEHALDPEYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDAIVVDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIVDLGSELDIVQKSGAWYSYNEERLGQGRENAKIFLKENPEIRNEIMLK
IREHYGLDTGRAETDDQGELSLLED

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=730496 N5C46_RS04580 WP_034760069.1 878437..879474(-) (recA) [Rossellomorea vietnamensis strain RL-WG62]
GTGAGCGATCGTAAAGCAGCCTTAGATATGGCGTTAAAACAAATAGAAAAGCAGTTTGGTAAAGGCTCAATCATGAAGCT
TGGGGAGAAAACGGACAGAAACGTAGTGACATGTCCAAGTGGTTCACTTGCACTGGACGCTGCTCTTGGAATAGGCGGAT
ATCCACGTGGAAGGATCATTGAGGTATATGGTCCCGAATCATCCGGTAAAACAACAGTGGCACTTCATGCGATAGCAGAG
GTTCAGGCTCAGGGCGGGCAGGCAGCATTCATCGATGCAGAGCACGCACTTGATCCCGAGTATGCTCAAAAGCTTGGGGT
AAACATAGATGAATTATTACTTTCACAACCAGATACAGGTGAACAGGCATTGGAAATCGCTGAAGCACTTGTACGAAGCG
GCGCCGTGGATGCCATCGTTGTCGACTCTGTGGCTGCCCTTGTACCGAAGGCGGAAATCGAAGGCGAGATGGGAGATGCT
CACGTAGGTCTTCAAGCCCGTTTAATGTCACAGGCCCTTCGTAAACTTTCCGGTGCCATCAATAAGTCTAAGACCATCGC
GATCTTCATTAACCAGATCCGTGAGAAGGTCGGTGTCATGTTCGGTAACCCTGAAACGACTCCCGGTGGACGCGCACTGA
AGTTCTATTCTTCCGTACGTTTGGAAGTCCGTCGTGCCGAAACCCTTAAGCAGGGTAATGAAATGGTTGGGAATAAAACA
AAGATCAAAGTAGTGAAAAATAAAGTGGCTCCACCTTTCCGTGTAGCTGAAGTGGACATCATGTACGGGGAAGGAATCTC
CAAAGAGGGTGAAATCGTCGATCTTGGGTCTGAATTGGACATCGTTCAAAAGAGCGGTGCCTGGTACTCCTACAACGAAG
AGCGCCTAGGCCAGGGTCGTGAGAACGCAAAGATCTTCCTGAAAGAAAATCCTGAGATCCGTAATGAAATCATGCTGAAG
ATCCGTGAACATTACGGATTGGATACAGGTCGTGCCGAAACGGACGATCAAGGTGAATTGAGTCTTCTGGAAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6UEU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.97

95.362

0.858
  recA Latilactobacillus sakei subsp. sakei 23K

76.308

94.203

0.719
  recA Streptococcus mutans UA159

70.213

95.362

0.67
  recA Streptococcus pneumoniae Rx1

69.369

96.522

0.67
  recA Streptococcus mitis NCTC 12261

69.369

96.522

0.67
  recA Streptococcus pneumoniae D39

69.369

96.522

0.67
  recA Streptococcus pneumoniae R6

69.369

96.522

0.67
  recA Streptococcus pneumoniae TIGR4

69.369

96.522

0.67
  recA Streptococcus mitis SK321

69.069

96.522

0.667
  recA Streptococcus pyogenes NZ131

69.512

95.072

0.661
  recA Lactococcus lactis subsp. cremoris KW2

66.97

95.652

0.641
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.307

98.261

0.632
  recA Neisseria gonorrhoeae strain FA1090

65.758

95.652

0.629
  recA Neisseria gonorrhoeae MS11

65.758

95.652

0.629
  recA Neisseria gonorrhoeae MS11

65.758

95.652

0.629
  recA Ralstonia pseudosolanacearum GMI1000

68.69

90.725

0.623
  recA Acinetobacter baumannii D1279779

62.209

99.71

0.62
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.732

93.043

0.612
  recA Vibrio cholerae strain A1552

65.732

93.043

0.612
  recA Acinetobacter baylyi ADP1

64.615

94.203

0.609
  recA Helicobacter pylori 26695

64.308

94.203

0.606
  recA Helicobacter pylori strain NCTC11637

64.308

94.203

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.783

0.603
  recA Pseudomonas stutzeri DSM 10701

65

92.754

0.603
  recA Glaesserella parasuis strain SC1401

64.263

92.464

0.594
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.615

94.203

0.571