Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   N5C46_RS04585 Genome accession   NZ_CP104558
Coordinates   879672..880907 (-) Length   411 a.a.
NCBI ID   WP_261751117.1    Uniprot ID   -
Organism   Rossellomorea vietnamensis strain RL-WG62     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 874672..885907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5C46_RS04565 (N5C46_04565) spoVS 875067..875327 (-) 261 WP_034760060.1 stage V sporulation protein SpoVS -
  N5C46_RS04570 (N5C46_04570) - 875464..876267 (-) 804 WP_061809970.1 TIGR00282 family metallophosphoesterase -
  N5C46_RS04575 (N5C46_04575) rny 876433..877992 (-) 1560 WP_034760066.1 ribonuclease Y -
  N5C46_RS04580 (N5C46_04580) recA 878437..879474 (-) 1038 WP_034760069.1 recombinase RecA Machinery gene
  N5C46_RS04585 (N5C46_04585) cinA 879672..880907 (-) 1236 WP_261751117.1 competence/damage-inducible protein A Machinery gene
  N5C46_RS04590 (N5C46_04590) pgsA 880979..881557 (-) 579 WP_034760074.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N5C46_RS04595 (N5C46_04595) - 881639..882535 (-) 897 WP_261751118.1 helix-turn-helix domain-containing protein -
  N5C46_RS04600 (N5C46_04600) - 882555..883346 (-) 792 WP_034760078.1 DUF3388 domain-containing protein -
  N5C46_RS04605 (N5C46_04605) - 883568..883825 (-) 258 WP_034760081.1 DUF3243 domain-containing protein -
  N5C46_RS04610 (N5C46_04610) ymfI 883914..884630 (-) 717 WP_261751119.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45012.59 Da        Isoelectric Point: 6.3745

>NTDB_id=730497 N5C46_RS04585 WP_261751117.1 879672..880907(-) (cinA) [Rossellomorea vietnamensis strain RL-WG62]
MNAEIIAVGSELLLGQIVNSNAQYISEQLAEMGVNVYYHTSVGDNPARLQEVIEVAKKRADLLIFTGGLGPTKDDLTKET
IANALGTTLSMDHDALESIKGYFQKVNREMTPNNEKQALILSGAHVLKNEHGMAPGMLLKKEGTSYMLLPGPPSEMRPMF
DKHGKQAILNLMKKKEIIHSRVLRFFGIGEAELETQLEDLIDRQTNPTIAPLAGDGEVTLRLTAKHESMDIAVSLLDSVE
EKILKRVGELFYGYNQDSLVEVGVHLLKEKGLTLSCAESLTGGLFQAQLTSIPGASDVLSGGVICYQDEIKKRILSVNDR
TLKQHSAVSEQCARELAENVRELFSTDIGISFTGVAGPDTHQGHPAGTVWIGLSMKDRTTKAFLLNLGGGRNGNRMRTAK
YGWHYLIKELS

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=730497 N5C46_RS04585 WP_261751117.1 879672..880907(-) (cinA) [Rossellomorea vietnamensis strain RL-WG62]
ATGAATGCAGAAATAATAGCCGTTGGGTCCGAATTATTGCTCGGACAAATCGTCAATTCCAATGCTCAATACATTTCCGA
ACAGTTGGCTGAGATGGGAGTGAACGTGTATTATCACACGAGTGTGGGGGATAACCCTGCCCGTTTACAAGAGGTCATTG
AGGTAGCAAAGAAGCGGGCGGACTTATTGATCTTTACTGGAGGCCTTGGACCCACAAAGGATGATCTGACGAAAGAAACG
ATCGCCAATGCTTTAGGAACGACTTTAAGCATGGATCATGACGCATTGGAATCGATAAAAGGCTATTTTCAGAAGGTCAA
TCGTGAAATGACCCCGAATAATGAAAAACAAGCCCTTATTTTATCCGGGGCCCATGTATTGAAGAACGAACACGGCATGG
CTCCGGGGATGCTGTTGAAAAAGGAGGGTACCTCCTATATGCTTCTCCCCGGTCCGCCGTCTGAAATGAGGCCGATGTTT
GATAAGCATGGCAAACAGGCAATCCTGAACTTGATGAAGAAGAAAGAAATCATCCATTCACGGGTACTTCGTTTCTTTGG
CATCGGGGAAGCAGAGCTTGAAACGCAATTAGAAGATCTGATCGACAGACAAACCAATCCCACTATCGCCCCTCTCGCTG
GTGACGGGGAAGTGACCTTGAGGCTTACGGCTAAGCACGAGTCAATGGATATTGCCGTGTCATTATTGGATTCGGTTGAA
GAAAAGATCTTGAAAAGGGTGGGGGAATTATTCTACGGTTATAATCAGGATTCTCTTGTTGAAGTGGGGGTCCATTTGTT
AAAAGAGAAGGGACTTACCCTTTCATGTGCAGAAAGTTTGACTGGAGGACTGTTTCAGGCCCAACTGACGTCTATACCCG
GGGCATCGGATGTTTTGAGCGGCGGGGTGATCTGTTATCAGGATGAGATCAAGAAAAGGATTTTATCTGTTAATGACCGT
ACACTTAAACAGCATTCAGCAGTCAGTGAGCAATGTGCACGGGAACTGGCTGAAAACGTTAGAGAGCTGTTTTCCACCGA
CATCGGGATCAGCTTTACAGGTGTAGCAGGTCCTGACACTCACCAGGGGCATCCTGCAGGGACCGTCTGGATCGGATTAT
CCATGAAGGATCGAACGACCAAGGCATTTCTATTGAACCTTGGCGGTGGCCGGAATGGGAACCGGATGAGAACGGCGAAG
TATGGTTGGCACTATTTGATCAAAGAACTGAGTTAG

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.088

99.27

0.577
  cinA Streptococcus mutans UA159

49.626

97.567

0.484
  cinA Streptococcus mitis SK321

49.749

96.837

0.482
  cinA Streptococcus mitis NCTC 12261

49.246

96.837

0.477
  cinA Streptococcus pneumoniae TIGR4

48.492

96.837

0.47
  cinA Streptococcus pneumoniae Rx1

48.241

96.837

0.467
  cinA Streptococcus pneumoniae R6

48.241

96.837

0.467
  cinA Streptococcus pneumoniae D39

47.99

96.837

0.465
  cinA Streptococcus suis isolate S10

39.659

100

0.397