Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SHINM1_RS10510 Genome accession   NZ_AP019011
Coordinates   2095421..2096452 (-) Length   343 a.a.
NCBI ID   WP_162048788.1    Uniprot ID   A0A679I7B8
Organism   Fluviibacter phosphoraccumulans strain SHINM1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2090421..2101452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHINM1_RS10480 (SHINM1_020660) hprK 2090663..2091682 (-) 1020 WP_211149033.1 HPr(Ser) kinase/phosphatase -
  SHINM1_RS10485 (SHINM1_020670) - 2091698..2092171 (-) 474 WP_242451477.1 PTS sugar transporter subunit IIA -
  SHINM1_RS10490 (SHINM1_020680) hpf 2092200..2092520 (-) 321 WP_162048792.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SHINM1_RS10495 (SHINM1_020690) rpoN/rpoN1 2092531..2094030 (-) 1500 WP_162048791.1 RNA polymerase factor sigma-54 Machinery gene
  SHINM1_RS10500 (SHINM1_020700) lptB 2094069..2094806 (-) 738 WP_162048790.1 LPS export ABC transporter ATP-binding protein -
  SHINM1_RS10505 (SHINM1_020710) - 2094838..2095398 (-) 561 WP_174237188.1 regulatory protein RecX -
  SHINM1_RS10510 (SHINM1_020720) recA 2095421..2096452 (-) 1032 WP_162048788.1 recombinase RecA Machinery gene
  SHINM1_RS10515 (SHINM1_020730) - 2096595..2098631 (+) 2037 WP_242451476.1 UvrD-helicase domain-containing protein -
  SHINM1_RS10520 (SHINM1_020740) - 2098684..2099115 (-) 432 WP_162048787.1 c-type cytochrome -
  SHINM1_RS10530 (SHINM1_020750) - 2099348..2100334 (+) 987 WP_162048786.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36385.99 Da        Isoelectric Point: 5.8822

>NTDB_id=72085 SHINM1_RS10510 WP_162048788.1 2095421..2096452(-) (recA) [Fluviibacter phosphoraccumulans strain SHINM1]
MDENKVKALGAALAQIEKQFGKGAIMKMGDAQIDQGIQSVSTGSLGLDMALGIGGLPRGRVVEIYGPESSGKTTLTLQVI
AAAQRAGGTAAFIDAEHALDPIYAGKLGVDVPNLIISQPDTGEQGLEIADMLVRSGGVDIIVIDSVAALTPRAEIEGEMG
DSMMGLHARLMSQALRKLTGSIKKTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKRGDEVVGS
ETRVKVVKNKVAPPFREAIFDILYGEGISREGEIIELGVEHKIVDKAGAWYAYNGEKIGQGKDNVREFLKTRPEMAKEIE
ARIMEAAGITIGGAKPAPAGDDA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=72085 SHINM1_RS10510 WP_162048788.1 2095421..2096452(-) (recA) [Fluviibacter phosphoraccumulans strain SHINM1]
ATGGACGAAAACAAGGTCAAGGCACTCGGTGCCGCGCTAGCCCAGATCGAAAAGCAATTCGGCAAGGGCGCCATCATGAA
AATGGGCGACGCACAGATCGATCAAGGCATTCAATCCGTGTCGACCGGCTCGCTGGGGCTCGACATGGCACTCGGTATCG
GCGGTCTGCCACGCGGTCGTGTGGTCGAAATTTACGGTCCGGAATCATCGGGTAAAACCACGCTAACCCTGCAGGTCATC
GCCGCTGCTCAGCGCGCCGGTGGTACCGCGGCCTTTATCGATGCCGAACACGCCCTCGACCCGATCTACGCTGGCAAGCT
GGGTGTTGATGTACCCAACCTGATCATTTCGCAACCAGATACCGGTGAACAGGGTCTGGAAATTGCCGACATGCTGGTAC
GTTCCGGCGGCGTTGACATCATCGTCATTGACTCGGTCGCCGCACTGACGCCGCGCGCTGAAATCGAAGGCGAAATGGGC
GACTCCATGATGGGTCTGCATGCCCGACTGATGAGCCAGGCGCTGCGTAAGCTCACCGGCAGCATCAAGAAAACCAATAC
CCTCGTTATCTTCATTAATCAGATCCGCATGAAGATCGGTGTCATGTTCGGTAACCCGGAAACCACCACTGGCGGTAACG
CGCTGAAGTTCTACGCATCGGTGCGTCTGGACATCCGCCGTATCGGTGCCATCAAGCGTGGTGACGAAGTGGTGGGTTCA
GAAACCCGCGTCAAGGTCGTTAAGAACAAAGTAGCGCCCCCGTTCCGCGAAGCCATCTTCGACATTCTTTATGGCGAAGG
TATTTCGCGCGAAGGCGAAATCATCGAATTGGGTGTCGAGCACAAGATCGTCGACAAGGCCGGTGCCTGGTATGCCTACA
ACGGTGAGAAGATCGGCCAGGGCAAAGACAATGTCCGTGAGTTCCTCAAGACCCGTCCGGAAATGGCCAAGGAAATCGAA
GCCAGAATCATGGAAGCGGCCGGTATCACCATCGGTGGTGCCAAGCCCGCGCCTGCTGGCGACGACGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A679I7B8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.31

93.003

0.738
  recA Pseudomonas stutzeri DSM 10701

73.099

99.708

0.729
  recA Acinetobacter baylyi ADP1

73.231

94.752

0.694
  recA Neisseria gonorrhoeae MS11

71.601

96.501

0.691
  recA Neisseria gonorrhoeae strain FA1090

71.601

96.501

0.691
  recA Neisseria gonorrhoeae MS11

71.601

96.501

0.691
  recA Glaesserella parasuis strain SC1401

69.118

99.125

0.685
  recA Acinetobacter baumannii D1279779

72.308

94.752

0.685
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.385

94.752

0.676
  recA Vibrio cholerae strain A1552

71.385

94.752

0.676
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.046

95.918

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.939

96.21

0.615
  recA Bacillus subtilis subsp. subtilis str. 168

64.417

95.044

0.612
  recA Helicobacter pylori 26695

63.222

95.918

0.606
  recA Helicobacter pylori strain NCTC11637

63.222

95.918

0.606
  recA Streptococcus mitis SK321

59.118

99.125

0.586
  recA Streptococcus mutans UA159

61.35

95.044

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

59.701

97.668

0.583
  recA Streptococcus pneumoniae Rx1

60.303

96.21

0.58
  recA Streptococcus pneumoniae D39

60.303

96.21

0.58
  recA Streptococcus pneumoniae R6

60.303

96.21

0.58
  recA Streptococcus pneumoniae TIGR4

60.303

96.21

0.58
  recA Streptococcus mitis NCTC 12261

60

96.21

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.816

95.044

0.569
  recA Lactococcus lactis subsp. cremoris KW2

59.327

95.335

0.566
  recA Streptococcus pyogenes NZ131

59.692

94.752

0.566

Multiple sequence alignment