Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   SHINM1_RS10495 Genome accession   NZ_AP019011
Coordinates   2092531..2094030 (-) Length   499 a.a.
NCBI ID   WP_162048791.1    Uniprot ID   -
Organism   Fluviibacter phosphoraccumulans strain SHINM1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2087531..2099030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHINM1_RS10465 (SHINM1_020630) - 2087627..2088859 (-) 1233 WP_162048796.1 class I SAM-dependent methyltransferase -
  SHINM1_RS10470 (SHINM1_020640) - 2088970..2089716 (+) 747 WP_162048795.1 pteridine reductase -
  SHINM1_RS10475 (SHINM1_020650) ttcA 2089729..2090658 (+) 930 WP_211149032.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  SHINM1_RS10480 (SHINM1_020660) hprK 2090663..2091682 (-) 1020 WP_211149033.1 HPr(Ser) kinase/phosphatase -
  SHINM1_RS10485 (SHINM1_020670) - 2091698..2092171 (-) 474 WP_242451477.1 PTS sugar transporter subunit IIA -
  SHINM1_RS10490 (SHINM1_020680) hpf 2092200..2092520 (-) 321 WP_162048792.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SHINM1_RS10495 (SHINM1_020690) rpoN/rpoN1 2092531..2094030 (-) 1500 WP_162048791.1 RNA polymerase factor sigma-54 Machinery gene
  SHINM1_RS10500 (SHINM1_020700) lptB 2094069..2094806 (-) 738 WP_162048790.1 LPS export ABC transporter ATP-binding protein -
  SHINM1_RS10505 (SHINM1_020710) - 2094838..2095398 (-) 561 WP_174237188.1 regulatory protein RecX -
  SHINM1_RS10510 (SHINM1_020720) recA 2095421..2096452 (-) 1032 WP_162048788.1 recombinase RecA Machinery gene
  SHINM1_RS10515 (SHINM1_020730) - 2096595..2098631 (+) 2037 WP_242451476.1 UvrD-helicase domain-containing protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 54826.55 Da        Isoelectric Point: 4.5879

>NTDB_id=72084 SHINM1_RS10495 WP_162048791.1 2092531..2094030(-) (rpoN/rpoN1) [Fluviibacter phosphoraccumulans strain SHINM1]
MKASLQLKGTQHLTMTPQLQQSIRLLQLSSVELQQEVAQALAENPMLERDDAEEGEGNDTDATTTADNNHTHQEFSNETR
AEFNEPRAEPSDNGNEGMTDAAEAFEQSSPMDMDEGPYAYSGSGGEDNDSDYDADGSGGITLREHLLTQVGLQRCSWREQ
ALIRILIEALDERGYLTSGLEEILAALPADEAVTLPEIEAALAQLQELDPLGVGARTLNECLLLQLKELIDPAADLARSL
VTDYLPALAQRDFVLLRRKTGADDNALRDAQALIRSLNPHPGHSFLDDASPYIIPDVLVRKTPKAKADRWMATTNPDALP
RLKINRLYAGLLRQASGGHSGLTGQLQEARWLIKNIQQRFETIERVAQAIVDEQAAFFEKGELAMRPLVLREIADQLGLH
ESTISRVTSQKFMATPRGVFEFKYFFGSHVGTDDGGAASATAIKARIRQLIGGENPKKPLSDQQICDQFSAEGIVVARRT
IAKYREAMGLPTASLRKTL

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=72084 SHINM1_RS10495 WP_162048791.1 2092531..2094030(-) (rpoN/rpoN1) [Fluviibacter phosphoraccumulans strain SHINM1]
ATGAAGGCCAGCCTGCAACTCAAAGGCACGCAGCACCTGACAATGACCCCGCAATTGCAACAGTCGATCCGACTGCTGCA
ACTGTCCTCGGTCGAACTGCAACAAGAAGTGGCGCAAGCGCTGGCTGAAAACCCCATGCTCGAACGCGATGATGCAGAAG
AGGGCGAGGGCAACGACACCGACGCCACAACAACGGCCGATAACAACCATACGCATCAAGAGTTTTCTAACGAAACGCGC
GCAGAATTTAATGAGCCGCGTGCTGAGCCTAGCGATAACGGCAACGAAGGCATGACAGATGCCGCCGAGGCCTTCGAGCA
GTCCAGCCCCATGGATATGGATGAAGGCCCCTACGCCTACTCGGGATCCGGCGGAGAGGATAACGACAGCGACTACGATG
CAGATGGCAGCGGTGGCATTACCCTGCGTGAACATCTGCTCACCCAGGTCGGTCTTCAACGCTGCAGCTGGCGTGAACAA
GCCCTCATACGCATTCTGATCGAAGCCCTCGACGAACGGGGTTATCTGACCAGCGGACTGGAAGAGATTCTGGCCGCACT
GCCAGCAGATGAGGCAGTTACCCTGCCAGAAATTGAAGCGGCTCTGGCGCAACTACAAGAGCTCGACCCACTCGGCGTCG
GGGCACGCACGCTGAATGAATGTTTATTGCTGCAACTAAAAGAACTGATCGACCCCGCGGCCGATCTGGCCCGTAGCCTG
GTCACCGACTACCTACCTGCACTCGCGCAGCGTGATTTCGTCCTGCTGAGACGCAAAACCGGGGCCGACGACAATGCCTT
GCGCGATGCCCAGGCGCTGATTCGTAGCCTGAATCCGCACCCGGGTCATAGCTTCCTCGACGATGCCAGCCCGTACATCA
TTCCCGATGTTCTGGTGCGCAAAACCCCCAAAGCTAAAGCCGATCGCTGGATGGCCACGACCAATCCGGATGCTTTGCCC
CGACTCAAAATCAATCGGCTCTATGCCGGTTTGCTTCGGCAAGCGAGCGGTGGCCACAGTGGCCTCACGGGGCAGCTGCA
AGAAGCCCGTTGGCTCATCAAGAATATCCAGCAACGTTTCGAGACCATCGAACGGGTGGCGCAGGCCATTGTGGACGAAC
AGGCCGCTTTTTTTGAAAAAGGTGAGCTGGCCATGCGCCCGCTGGTCCTGCGCGAAATTGCCGACCAACTGGGCTTGCAC
GAATCCACCATTTCCCGCGTTACTTCCCAGAAATTCATGGCGACGCCGCGCGGAGTCTTTGAATTTAAATACTTTTTTGG
CAGCCATGTCGGCACGGATGACGGTGGCGCCGCTTCCGCCACTGCCATTAAAGCCCGAATCCGTCAGCTGATCGGGGGAG
AGAATCCGAAAAAACCACTCTCGGACCAACAAATTTGTGATCAATTTAGTGCCGAAGGCATTGTCGTAGCACGCCGTACC
ATAGCAAAATACCGTGAGGCGATGGGTCTTCCCACCGCCAGTTTGCGCAAGACCCTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(140-328)

Sigma-54, DNA binding domain (Sigma54_DBD)

(343-497)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.961

100

0.531

Multiple sequence alignment