Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | NJN40_RS10120 | Genome accession | NZ_CP102859 |
| Coordinates | 2094356..2095417 (-) | Length | 353 a.a. |
| NCBI ID | WP_003587498.1 | Uniprot ID | A0A829GV21 |
| Organism | Lacticaseibacillus paracasei strain DM001 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2090456..2122364 | 2094356..2095417 | within | 0 |
Gene organization within MGE regions
Location: 2090456..2122364
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NJN40_RS10105 (NJN40_10105) | - | 2090456..2091718 (-) | 1263 | WP_003569529.1 | helicase-related protein | - |
| NJN40_RS10110 (NJN40_10110) | - | 2091746..2092396 (+) | 651 | WP_003569527.1 | YigZ family protein | - |
| NJN40_RS10115 (NJN40_10115) | rny | 2092490..2094061 (-) | 1572 | WP_003657913.1 | ribonuclease Y | - |
| NJN40_RS10120 (NJN40_10120) | recA | 2094356..2095417 (-) | 1062 | WP_003587498.1 | recombinase RecA | Machinery gene |
| NJN40_RS10125 (NJN40_10125) | cinA | 2095474..2096715 (-) | 1242 | WP_003569520.1 | competence/damage-inducible protein A | Machinery gene |
| NJN40_RS10130 (NJN40_10130) | pgsA | 2097132..2097725 (-) | 594 | WP_003569518.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| NJN40_RS10135 (NJN40_10135) | - | 2097722..2098651 (-) | 930 | WP_253613657.1 | helix-turn-helix domain-containing protein | - |
| NJN40_RS10140 (NJN40_10140) | ymfI | 2098738..2099466 (-) | 729 | WP_003569514.1 | elongation factor P 5-aminopentanone reductase | - |
| NJN40_RS10145 (NJN40_10145) | yfmH | 2099466..2100758 (-) | 1293 | WP_003569512.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| NJN40_RS10150 (NJN40_10150) | yfmF | 2100755..2102017 (-) | 1263 | WP_003569510.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| NJN40_RS10155 (NJN40_10155) | - | 2102026..2104347 (-) | 2322 | WP_003569507.1 | DNA translocase FtsK | - |
| NJN40_RS10160 (NJN40_10160) | - | 2104520..2104930 (-) | 411 | WP_003564159.1 | DUF1149 family protein | - |
| NJN40_RS10165 (NJN40_10165) | trmL | 2105057..2105566 (-) | 510 | WP_003569505.1 | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | - |
| NJN40_RS10170 (NJN40_10170) | - | 2105821..2106663 (-) | 843 | WP_003569501.1 | methyltransferase domain-containing protein | - |
| NJN40_RS10175 (NJN40_10175) | - | 2106729..2107676 (+) | 948 | WP_003564155.1 | magnesium transporter CorA family protein | - |
| NJN40_RS10180 (NJN40_10180) | - | 2107916..2108893 (+) | 978 | WP_253613898.1 | GMP reductase | - |
| NJN40_RS10185 (NJN40_10185) | rpsN | 2109021..2109290 (+) | 270 | WP_003564153.1 | 30S ribosomal protein S14 | - |
| NJN40_RS10190 (NJN40_10190) | - | 2109402..2109779 (-) | 378 | WP_253613658.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| NJN40_RS10195 (NJN40_10195) | - | 2110051..2111091 (+) | 1041 | WP_016375060.1 | lactonase family protein | - |
| NJN40_RS10200 (NJN40_10200) | - | 2111294..2112112 (+) | 819 | WP_016373579.1 | undecaprenyl-diphosphate phosphatase | - |
| NJN40_RS10205 (NJN40_10205) | - | 2112134..2112769 (+) | 636 | WP_003569480.1 | copper homeostasis protein CutC | - |
| NJN40_RS10210 (NJN40_10210) | - | 2112926..2113984 (+) | 1059 | WP_253613659.1 | FAD:protein FMN transferase | - |
| NJN40_RS10215 (NJN40_10215) | - | 2114093..2114995 (-) | 903 | WP_128537623.1 | RluA family pseudouridine synthase | - |
| NJN40_RS10220 (NJN40_10220) | - | 2114995..2115792 (-) | 798 | WP_003564146.1 | NAD kinase | - |
| NJN40_RS10225 (NJN40_10225) | - | 2115794..2116465 (-) | 672 | WP_003564145.1 | GTP pyrophosphokinase family protein | - |
| NJN40_RS10230 (NJN40_10230) | - | 2116659..2117252 (+) | 594 | WP_076653169.1 | CYTH domain-containing protein | - |
| NJN40_RS10235 (NJN40_10235) | - | 2117322..2117957 (+) | 636 | WP_003564143.1 | DsbA family protein | - |
| NJN40_RS10240 (NJN40_10240) | - | 2118147..2119202 (-) | 1056 | WP_253613660.1 | competence protein CoiA | - |
| NJN40_RS10245 (NJN40_10245) | - | 2119312..2120655 (-) | 1344 | WP_003569470.1 | PFL family protein | - |
| NJN40_RS10250 (NJN40_10250) | - | 2120704..2120970 (-) | 267 | WP_003564140.1 | ACT domain-containing protein | - |
| NJN40_RS10255 (NJN40_10255) | - | 2121161..2121334 (+) | 174 | Protein_2026 | phosphohydrolase | - |
| NJN40_RS10260 (NJN40_10260) | - | 2121444..2122364 (+) | 921 | WP_003574021.1 | IS30 family transposase | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37705.92 Da Isoelectric Point: 5.5536
>NTDB_id=719343 NJN40_RS10120 WP_003587498.1 2094356..2095417(-) (recA) [Lacticaseibacillus paracasei strain DM001]
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIPQQAEV
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIPQQAEV
Nucleotide
Download Length: 1062 bp
>NTDB_id=719343 NJN40_RS10120 WP_003587498.1 2094356..2095417(-) (recA) [Lacticaseibacillus paracasei strain DM001]
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGTG
CCTTGAAGTTTTATGCGACTGTTCGGTTAGAGATCCGGCGGTCGGAACAAATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTTGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACCTCAACAGGCTGAAGTATGA
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGTG
CCTTGAAGTTTTATGCGACTGTTCGGTTAGAGATCCGGCGGTCGGAACAAATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTTGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACCTCAACAGGCTGAAGTATGA
Similar proteins
Only experimentally validated proteins are listed.