Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NQZ71_RS14490 Genome accession   NZ_CP102589
Coordinates   2866340..2867389 (-) Length   349 a.a.
NCBI ID   WP_275005051.1    Uniprot ID   -
Organism   Niallia taxi strain NBC_Nia     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2861340..2872389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ71_RS14470 (NQZ71_14490) - 2861794..2862720 (-) 927 WP_275005588.1 dipeptidase -
  NQZ71_RS14475 (NQZ71_14495) spoVS 2862906..2863166 (-) 261 WP_016201204.1 stage V sporulation protein SpoVS -
  NQZ71_RS14480 (NQZ71_14500) - 2863375..2864172 (-) 798 WP_144452479.1 TIGR00282 family metallophosphoesterase -
  NQZ71_RS14485 (NQZ71_14505) rny 2864328..2865896 (-) 1569 WP_394374130.1 ribonuclease Y -
  NQZ71_RS14490 (NQZ71_14510) recA 2866340..2867389 (-) 1050 WP_275005051.1 recombinase RecA Machinery gene
  NQZ71_RS14495 (NQZ71_14515) cinA 2867569..2868810 (-) 1242 WP_275005049.1 competence/damage-inducible protein A Machinery gene
  NQZ71_RS14500 (NQZ71_14520) pgsA 2868895..2869473 (-) 579 WP_275005046.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NQZ71_RS14505 (NQZ71_14525) - 2869715..2870635 (-) 921 WP_317010911.1 RodZ domain-containing protein -
  NQZ71_RS14510 (NQZ71_14530) - 2870656..2871447 (-) 792 WP_127734451.1 YmfK family protein -
  NQZ71_RS14515 (NQZ71_14535) - 2871729..2871989 (-) 261 WP_144452475.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 38062.47 Da        Isoelectric Point: 4.9285

>NTDB_id=717944 NQZ71_RS14490 WP_275005051.1 2866340..2867389(-) (recA) [Niallia taxi strain NBC_Nia]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQTDRVVSTFPSGSLALDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDT
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAETLKQGTDMVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISKEGETIDLGSELDIVQKSGSWYSYNDERLGQGRENAKLFLKENKDILLEIQKK
IRDHYGLDKEVVLKPDQEEEDQESLELID

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=717944 NQZ71_RS14490 WP_275005051.1 2866340..2867389(-) (recA) [Niallia taxi strain NBC_Nia]
TTGAGCGATCGTCAAGCTGCTTTAGAAATGGCATTAAAACAGATAGAAAAACAATTTGGTAAAGGTAGCATCATGAAACT
GGGAGAACAGACAGACCGAGTTGTATCCACTTTTCCTAGTGGTTCATTAGCACTGGATGCAGCGCTTGGGGTTGGCGGAT
ATCCAAGAGGCCGTATTATTGAAATCTACGGTCCTGAAAGTTCTGGTAAAACTACTGTTGCCCTTCATGCAATCGCAGAA
GTGCAAGCAAAAGGAGGACAAGCTGCATTTATCGATGCTGAGCATGCACTGGATCCTGTTTATGCACAAAAGCTAGGCGT
TAATATTGATGAATTGCTTCTTTCTCAGCCGGATACAGGGGAACAAGCGCTTGAAATAGCTGAAGCATTGGTTAGAAGTG
GCGCAGTTGATATCCTTGTTATTGACTCTGTTGCAGCACTTGTGCCAAAAGCAGAAATTGAAGGGGAAATGGGTGACACC
CATGTTGGTTTGCAGGCCCGCCTAATGTCTCAAGCATTACGTAAGCTTTCTGGTGCAATCAACAAATCTAAAACTATTGC
TATTTTCATAAACCAGATTCGTGAAAAAGTTGGAGTTATGTTCGGTAATCCAGAAACGACTCCTGGTGGCCGTGCGTTGA
AGTTCTATTCCACTGTCCGCTTGGAAGTTCGCCGTGCTGAAACACTTAAGCAAGGTACGGACATGGTTGGTAACAAAACA
AAAATTAAAGTTGTAAAAAATAAAGTAGCTCCGCCGTTCAGAGTAGCAGAAGTGGATATTATGTACGGAGAAGGAATTTC
TAAAGAAGGAGAAACAATTGATTTAGGCTCTGAGTTGGATATTGTTCAAAAGAGTGGATCATGGTACTCCTATAATGATG
AGCGTTTAGGTCAAGGCCGCGAAAATGCGAAGTTATTCCTTAAAGAAAACAAAGATATCCTTCTTGAAATTCAAAAGAAA
ATCCGTGATCACTACGGTCTAGATAAAGAAGTTGTCTTGAAACCAGATCAGGAAGAAGAAGATCAAGAATCTCTTGAATT
GATAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.189

95.415

0.851
  recA Latilactobacillus sakei subsp. sakei 23K

72.934

100

0.734
  recA Streptococcus pneumoniae D39

67.435

99.427

0.67
  recA Streptococcus pneumoniae R6

67.435

99.427

0.67
  recA Streptococcus pneumoniae TIGR4

67.435

99.427

0.67
  recA Streptococcus pneumoniae Rx1

67.435

99.427

0.67
  recA Streptococcus mitis NCTC 12261

66.763

99.14

0.662
  recA Streptococcus mutans UA159

66.092

99.713

0.659
  recA Streptococcus mitis SK321

68.485

94.556

0.648
  recA Lactococcus lactis subsp. cremoris KW2

67.262

96.275

0.648
  recA Streptococcus pyogenes NZ131

67.988

93.983

0.639
  recA Neisseria gonorrhoeae strain FA1090

62.899

98.854

0.622
  recA Neisseria gonorrhoeae MS11

62.899

98.854

0.622
  recA Neisseria gonorrhoeae MS11

62.899

98.854

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.059

97.421

0.605
  recA Helicobacter pylori 26695

61.696

97.994

0.605
  recA Helicobacter pylori strain NCTC11637

61.696

97.994

0.605
  recA Vibrio cholerae strain A1552

62.985

95.989

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.985

95.989

0.605
  recA Ralstonia pseudosolanacearum GMI1000

67.412

89.685

0.605
  recA Acinetobacter baumannii D1279779

60.234

97.994

0.59
  recA Glaesserella parasuis strain SC1401

59.824

97.708

0.585
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

93.696

0.585
  recA Acinetobacter baylyi ADP1

61.801

92.264

0.57
  recA Pseudomonas stutzeri DSM 10701

62.187

91.691

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

92.55

0.564