Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NQZ71_RS14495 Genome accession   NZ_CP102589
Coordinates   2867569..2868810 (-) Length   413 a.a.
NCBI ID   WP_275005049.1    Uniprot ID   -
Organism   Niallia taxi strain NBC_Nia     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2862569..2873810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ71_RS14475 (NQZ71_14495) spoVS 2862906..2863166 (-) 261 WP_016201204.1 stage V sporulation protein SpoVS -
  NQZ71_RS14480 (NQZ71_14500) - 2863375..2864172 (-) 798 WP_144452479.1 TIGR00282 family metallophosphoesterase -
  NQZ71_RS14485 (NQZ71_14505) rny 2864328..2865896 (-) 1569 WP_394374130.1 ribonuclease Y -
  NQZ71_RS14490 (NQZ71_14510) recA 2866340..2867389 (-) 1050 WP_275005051.1 recombinase RecA Machinery gene
  NQZ71_RS14495 (NQZ71_14515) cinA 2867569..2868810 (-) 1242 WP_275005049.1 competence/damage-inducible protein A Machinery gene
  NQZ71_RS14500 (NQZ71_14520) pgsA 2868895..2869473 (-) 579 WP_275005046.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NQZ71_RS14505 (NQZ71_14525) - 2869715..2870635 (-) 921 WP_317010911.1 RodZ domain-containing protein -
  NQZ71_RS14510 (NQZ71_14530) - 2870656..2871447 (-) 792 WP_127734451.1 YmfK family protein -
  NQZ71_RS14515 (NQZ71_14535) - 2871729..2871989 (-) 261 WP_144452475.1 DUF3243 domain-containing protein -
  NQZ71_RS14520 (NQZ71_14540) ymfI 2872086..2872808 (-) 723 WP_317010912.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45122.44 Da        Isoelectric Point: 4.6804

>NTDB_id=717945 NQZ71_RS14495 WP_275005049.1 2867569..2868810(-) (cinA) [Niallia taxi strain NBC_Nia]
MNAEIIAVGSELLLGQIANTNAQYISKQLAQLGINVYFHTAVGDNPARLKEAIEVAESRSNLLVFTGGLGPTKDDLTKET
IAGHLGKELVFDEAALHSIEQYFVRSKRQMTENNKKQALVLEGSRILANDYGMAPGMFLEKDSRFYMLLPGPPKEMQPMF
DVYGYVALQEKLTTKELIVSRVLRFFGIGESLLETEILDLIEKQSNPTIAPLAGEGEVTLRITCKHDSQEEAERLIDEAE
KAIFERVGEFFYGYDDTTLAKELSKELGKHGLTIAAAESLTGGLFQQEMTNIPGAGNVFSGGVVCYTNEVKQNVLSVKEE
TITNDGVVSEQCAKELAENVAKLIDTDIGISFTGVAGPDELEGHPVGTVYIGISIKGQPTTCEKLLLGGGRSANRSRSAK
YGQFFLLKELQKL

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=717945 NQZ71_RS14495 WP_275005049.1 2867569..2868810(-) (cinA) [Niallia taxi strain NBC_Nia]
ATGAATGCAGAAATCATAGCGGTTGGCTCCGAATTATTACTAGGGCAGATAGCTAACACGAATGCACAATACATTTCAAA
GCAATTGGCTCAATTAGGAATTAACGTATATTTTCATACAGCGGTTGGAGATAACCCAGCCCGCTTAAAGGAAGCCATTG
AGGTTGCTGAATCTCGCTCTAATCTTCTTGTGTTTACAGGTGGGCTTGGTCCTACAAAGGATGATTTGACAAAGGAAACA
ATTGCAGGCCATCTTGGAAAAGAGCTTGTTTTTGATGAAGCTGCTCTTCATTCTATTGAGCAGTATTTTGTCCGCTCTAA
GCGACAAATGACAGAAAACAATAAAAAACAGGCGCTTGTTTTGGAAGGGTCGCGTATCCTTGCTAACGATTACGGCATGG
CACCAGGAATGTTTTTGGAAAAAGATAGCCGCTTCTATATGCTTCTGCCAGGACCTCCTAAGGAAATGCAGCCGATGTTT
GATGTATATGGATATGTCGCGCTTCAAGAGAAGCTGACAACGAAAGAACTGATTGTTTCCAGAGTGCTACGCTTCTTCGG
AATTGGAGAATCGCTGCTGGAAACAGAAATCCTCGACTTGATTGAAAAGCAATCAAATCCAACAATCGCACCGCTTGCAG
GAGAAGGGGAAGTTACACTTCGCATTACGTGCAAGCATGATTCACAGGAAGAAGCAGAACGCCTTATAGATGAGGCGGAA
AAGGCAATCTTTGAACGCGTTGGCGAGTTTTTCTATGGATACGACGACACAACGCTTGCCAAAGAGCTTTCTAAGGAGCT
TGGAAAACACGGCCTTACAATTGCTGCAGCAGAAAGCCTGACAGGCGGTCTGTTCCAGCAGGAGATGACGAACATTCCTG
GAGCAGGAAATGTGTTTAGCGGCGGAGTTGTTTGTTATACAAATGAAGTAAAACAAAATGTCCTTTCTGTCAAAGAGGAG
ACTATAACTAATGATGGTGTTGTGAGCGAACAGTGTGCCAAAGAGCTTGCTGAAAATGTTGCTAAGCTGATAGACACAGA
TATTGGCATTAGCTTCACAGGTGTAGCAGGTCCAGATGAATTAGAAGGTCATCCTGTAGGTACTGTTTATATTGGTATTT
CAATAAAAGGCCAGCCGACAACTTGTGAAAAGCTTCTTCTAGGGGGCGGGCGGTCCGCAAACAGAAGCAGGTCGGCAAAA
TACGGTCAATTCTTCCTGCTTAAAGAATTACAGAAGCTATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-164)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.951

99.274

0.615
  cinA Streptococcus pneumoniae TIGR4

48.325

100

0.489
  cinA Streptococcus pneumoniae Rx1

48.086

100

0.487
  cinA Streptococcus pneumoniae R6

48.086

100

0.487
  cinA Streptococcus pneumoniae D39

47.847

100

0.484
  cinA Streptococcus mitis SK321

47.608

100

0.482
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.479
  cinA Streptococcus mutans UA159

46.782

97.821

0.458
  cinA Streptococcus suis isolate S10

42.063

91.525

0.385