Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NQE15_RS23495 Genome accession   NZ_CP102486
Coordinates   4715817..4716845 (-) Length   342 a.a.
NCBI ID   WP_265945315.1    Uniprot ID   -
Organism   Dechloromonas sp. A34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4710817..4721845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQE15_RS23465 hprK 4711382..4712314 (-) 933 WP_265945305.1 HPr(Ser) kinase/phosphatase -
  NQE15_RS23470 ptsN 4712324..4712770 (-) 447 WP_265945307.1 PTS IIA-like nitrogen regulatory protein PtsN -
  NQE15_RS23475 hpf 4712826..4713149 (-) 324 WP_265945309.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NQE15_RS23480 rpoN/rpoN1 4713164..4714633 (-) 1470 WP_265945311.1 RNA polymerase factor sigma-54 Machinery gene
  NQE15_RS23485 lptB 4714662..4715396 (-) 735 WP_323054924.1 LPS export ABC transporter ATP-binding protein -
  NQE15_RS23490 recX 4715393..4715824 (-) 432 WP_265945313.1 recombination regulator RecX -
  NQE15_RS23495 recA 4715817..4716845 (-) 1029 WP_265945315.1 recombinase RecA Machinery gene
  NQE15_RS23500 - 4717057..4717281 (+) 225 WP_265945317.1 hypothetical protein -
  NQE15_RS23505 - 4717295..4717942 (+) 648 WP_265945319.1 pseudouridine synthase -
  NQE15_RS23510 - 4718003..4719544 (+) 1542 WP_265945321.1 sodium:solute symporter family protein -
  NQE15_RS23515 - 4719744..4721048 (-) 1305 Protein_4623 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36653.29 Da        Isoelectric Point: 6.6610

>NTDB_id=717265 NQE15_RS23495 WP_265945315.1 4715817..4716845(-) (recA) [Dechloromonas sp. A34]
MDDNKAKALAAALQQIEKQFGKGSIMKMGDAEIDEGIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLCLQVI
AEMQKLGGVAAFIDAEHALDPQYAQKLGVNVGDLLISQPDTGEQALEISDMLVRSGSVDIIVIDSVAALTPRAEIEGEMG
DQMVGLHARLMSQALRKLTANIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVIGS
ETKVKVVKNKVSPPFREAIFDILYGEGISRHGEIVEMGVAHKLVEKSGAWYAYKGEKIGQGKDNAREFLRSHPEIAQEIE
AGIREAASTNVIKPVKAAKADV

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=717265 NQE15_RS23495 WP_265945315.1 4715817..4716845(-) (recA) [Dechloromonas sp. A34]
ATGGACGACAACAAGGCAAAGGCGCTCGCCGCAGCGCTGCAACAGATCGAAAAGCAGTTCGGTAAAGGCTCCATCATGAA
GATGGGCGATGCCGAAATCGACGAAGGCATCCAGGTGGTGTCCACCGGATCGCTGGGTCTGGATATTGCCCTGGGCGTTG
GCGGACTGCCGCGCGGCCGGGTCGTTGAAATCTACGGACCGGAATCCTCGGGCAAGACCACGCTCTGTCTGCAGGTTATC
GCCGAAATGCAGAAACTCGGTGGCGTCGCCGCCTTCATCGATGCCGAACACGCCCTCGATCCGCAATATGCGCAAAAGCT
CGGCGTCAATGTCGGCGACCTGCTGATCTCGCAGCCGGATACCGGCGAACAGGCCCTCGAAATCTCGGACATGCTGGTCC
GCTCCGGTTCGGTCGACATCATCGTCATCGACTCGGTCGCCGCCCTCACCCCACGTGCCGAAATCGAAGGCGAAATGGGC
GACCAGATGGTCGGCCTGCACGCCAGGCTGATGAGCCAGGCCCTGCGCAAGCTGACCGCCAACATCAAGAAGACCAACAC
CCTGGTCGTCTTCATCAACCAGATCCGGATGAAGATCGGAGTCATGTTCGGTTCGCCGGAAACGACGACCGGTGGCAATG
CGCTGAAGTTCTACGCTTCCGTGCGCCTCGATATCCGCCGCATCGGCTCGATCAAGAAGGGCGATGAAGTCATCGGCAGC
GAAACCAAGGTCAAGGTCGTCAAGAACAAGGTCTCGCCACCGTTCCGCGAAGCCATTTTTGACATTCTGTACGGCGAAGG
TATTTCCCGCCACGGCGAAATCGTCGAAATGGGTGTCGCCCACAAGCTGGTCGAGAAATCCGGCGCCTGGTATGCCTACA
AGGGCGAGAAAATCGGCCAGGGCAAGGACAACGCCCGAGAATTCCTGCGCAGCCATCCGGAAATCGCCCAGGAAATCGAG
GCCGGCATCCGCGAGGCCGCCAGCACCAACGTCATCAAGCCGGTCAAGGCTGCCAAGGCTGATGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.903

90.643

0.751
  recA Pseudomonas stutzeri DSM 10701

75.309

94.737

0.713
  recA Neisseria gonorrhoeae MS11

73.765

94.737

0.699
  recA Neisseria gonorrhoeae MS11

73.765

94.737

0.699
  recA Neisseria gonorrhoeae strain FA1090

73.765

94.737

0.699
  recA Glaesserella parasuis strain SC1401

70

99.415

0.696
  recA Acinetobacter baylyi ADP1

72

95.029

0.684
  recA Acinetobacter baumannii D1279779

70.154

95.029

0.667
  recA Vibrio cholerae strain A1552

68.615

95.029

0.652
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.615

95.029

0.652
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.046

96.199

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

95.614

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

64.615

95.029

0.614
  recA Helicobacter pylori 26695

62.236

96.784

0.602
  recA Helicobacter pylori strain NCTC11637

61.934

96.784

0.599
  recA Latilactobacillus sakei subsp. sakei 23K

62.654

94.737

0.594
  recA Streptococcus pneumoniae R6

61.42

94.737

0.582
  recA Streptococcus pneumoniae Rx1

61.42

94.737

0.582
  recA Streptococcus pneumoniae D39

61.42

94.737

0.582
  recA Streptococcus pneumoniae TIGR4

61.42

94.737

0.582
  recA Streptococcus mutans UA159

60.736

95.322

0.579
  recA Streptococcus mitis NCTC 12261

60.802

94.737

0.576
  recA Streptococcus mitis SK321

60.494

94.737

0.573
  recA Streptococcus pyogenes NZ131

59.816

95.322

0.57
  recA Lactococcus lactis subsp. cremoris KW2

60.185

94.737

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.443

92.398

0.558