Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NQE15_RS23480 Genome accession   NZ_CP102486
Coordinates   4713164..4714633 (-) Length   489 a.a.
NCBI ID   WP_265945311.1    Uniprot ID   -
Organism   Dechloromonas sp. A34     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4708164..4719633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQE15_RS23455 ttcA 4709496..4710359 (+) 864 WP_265945301.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  NQE15_RS23460 - 4710424..4711323 (+) 900 WP_265945303.1 adenylate/guanylate cyclase domain-containing protein -
  NQE15_RS23465 hprK 4711382..4712314 (-) 933 WP_265945305.1 HPr(Ser) kinase/phosphatase -
  NQE15_RS23470 ptsN 4712324..4712770 (-) 447 WP_265945307.1 PTS IIA-like nitrogen regulatory protein PtsN -
  NQE15_RS23475 hpf 4712826..4713149 (-) 324 WP_265945309.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NQE15_RS23480 rpoN/rpoN1 4713164..4714633 (-) 1470 WP_265945311.1 RNA polymerase factor sigma-54 Machinery gene
  NQE15_RS23485 lptB 4714662..4715396 (-) 735 WP_323054924.1 LPS export ABC transporter ATP-binding protein -
  NQE15_RS23490 recX 4715393..4715824 (-) 432 WP_265945313.1 recombination regulator RecX -
  NQE15_RS23495 recA 4715817..4716845 (-) 1029 WP_265945315.1 recombinase RecA Machinery gene
  NQE15_RS23500 - 4717057..4717281 (+) 225 WP_265945317.1 hypothetical protein -
  NQE15_RS23505 - 4717295..4717942 (+) 648 WP_265945319.1 pseudouridine synthase -
  NQE15_RS23510 - 4718003..4719544 (+) 1542 WP_265945321.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 489 a.a.        Molecular weight: 55147.46 Da        Isoelectric Point: 5.2116

>NTDB_id=717264 NQE15_RS23480 WP_265945311.1 4713164..4714633(-) (rpoN/rpoN1) [Dechloromonas sp. A34]
MKPALQLKLSQHLALTPQLQQSIKLLQLSTVEMQQEIERYLLENPMLERDDDGGSETFTAAQQFDSPQTSEGEREQKVER
EERDARDDREMDVPSAPSDVDDDRWSSDAGTFTGAGRDEDDDSDAQDIHAGTISLRDHLGWQLGMTQLTERDRALVRFLI
EALDDDGYLSASLLELLETLPPEYEIELEELEIALHHIQHFDPTGIGARSPQECLALQLKALQPCAEQPLALAIVEKHLE
LLAARDFVKIRRLTGCDDEALRAAHALITRLNPRPGAGFAQVEARYITPDVIVKKLKNKWTAYINPDAYPRLRINRLYAE
ILSRQRRGNGNLTGQLQEARWLIKNVQQRFETIHRVTQAIVDRQRQFFEHGEVAMRPLVLREIADILGLHESTVSRVTSQ
KYMATPRGIFELKYFFGSHVATDTGGACSATAIRALIKQLIGAEDGKKPLSDSQLSEILGQQGIVVARRTVAKYRESLNI
PPVNLRKTL

Nucleotide


Download         Length: 1470 bp        

>NTDB_id=717264 NQE15_RS23480 WP_265945311.1 4713164..4714633(-) (rpoN/rpoN1) [Dechloromonas sp. A34]
ATGAAACCTGCCCTCCAACTCAAACTATCCCAGCATCTGGCGCTGACCCCCCAGTTGCAGCAGTCGATCAAGCTGCTACA
GCTGTCGACGGTGGAAATGCAGCAGGAAATCGAACGCTATCTGCTCGAAAATCCGATGCTGGAGCGCGACGACGACGGTG
GCAGCGAGACCTTTACCGCGGCTCAGCAGTTCGACTCGCCGCAGACCAGCGAAGGTGAGCGCGAACAGAAGGTCGAACGC
GAAGAGCGCGATGCCCGCGACGACCGTGAAATGGATGTGCCATCAGCCCCCTCCGATGTCGACGACGATCGCTGGAGCTC
GGATGCTGGGACCTTTACCGGTGCCGGGCGCGACGAGGACGACGATAGCGATGCCCAGGACATTCATGCCGGCACCATCA
GCCTGCGCGATCATCTCGGCTGGCAACTGGGCATGACCCAGCTGACCGAGCGCGATCGTGCCCTGGTCCGCTTCCTGATC
GAAGCCCTCGACGATGACGGCTACCTGTCGGCTTCCTTGCTGGAACTTCTTGAAACTCTGCCGCCGGAATACGAGATCGA
GCTCGAAGAGCTCGAAATCGCCCTGCATCATATCCAGCACTTCGATCCGACCGGGATTGGCGCGCGCAGCCCGCAGGAAT
GCCTGGCCCTGCAACTCAAGGCCCTGCAGCCCTGTGCCGAACAGCCGTTGGCCCTGGCCATCGTCGAAAAGCACCTCGAG
TTGCTGGCCGCCCGGGATTTCGTCAAGATTCGCCGCCTGACCGGCTGCGACGACGAGGCGCTGCGCGCGGCGCACGCTCT
GATCACTCGTCTGAATCCGCGGCCGGGGGCCGGTTTTGCCCAGGTCGAGGCGCGCTACATTACGCCTGACGTCATCGTCA
AAAAGCTCAAGAACAAGTGGACGGCCTACATCAATCCGGATGCCTATCCCCGCCTGCGCATCAACCGCCTGTATGCCGAG
ATACTCTCCCGCCAGCGCCGGGGCAATGGCAACCTGACCGGCCAGTTGCAGGAGGCCCGCTGGTTGATCAAGAACGTCCA
GCAGCGCTTCGAGACCATCCACCGCGTAACCCAGGCCATCGTCGATCGCCAGCGCCAGTTTTTCGAGCATGGCGAAGTCG
CCATGCGGCCGCTGGTGTTGCGCGAAATCGCCGACATTCTCGGCCTGCATGAATCGACCGTCTCCCGCGTCACCAGCCAG
AAATACATGGCGACGCCGCGGGGCATTTTTGAGCTGAAATACTTCTTCGGTAGCCATGTTGCTACCGACACCGGCGGAGC
TTGTTCCGCCACCGCCATCCGCGCTCTGATCAAGCAGTTGATCGGAGCCGAGGACGGCAAGAAGCCCTTGTCGGATAGTC
AATTATCCGAAATACTAGGCCAGCAGGGAATCGTTGTCGCCCGACGCACGGTAGCCAAATACCGCGAGTCGCTCAACATC
CCGCCGGTCAATTTACGCAAGACCCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(333-487)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(126-318)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

55.424

100

0.575