Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NQ504_RS04395 Genome accession   NZ_CP102284
Coordinates   873231..874319 (+) Length   362 a.a.
NCBI ID   WP_003693601.1    Uniprot ID   F7QXA0
Organism   Ligilactobacillus ruminis strain ATCC 25644     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 868231..879319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ504_RS04375 (NQ504_04375) ymfI 869353..870081 (+) 729 WP_003693593.1 elongation factor P 5-aminopentanone reductase -
  NQ504_RS04380 (NQ504_04380) - 870185..871072 (+) 888 WP_003697962.1 helix-turn-helix domain-containing protein -
  NQ504_RS04385 (NQ504_04385) pgsA 871141..871728 (+) 588 WP_003693597.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NQ504_RS04390 (NQ504_04390) cinA 871872..873110 (+) 1239 WP_003693599.1 competence/damage-inducible protein A Machinery gene
  NQ504_RS04395 (NQ504_04395) recA 873231..874319 (+) 1089 WP_003693601.1 recombinase RecA Machinery gene
  NQ504_RS04400 (NQ504_04400) rny 874652..876208 (+) 1557 WP_035158700.1 ribonuclease Y -
  NQ504_RS04405 (NQ504_04405) - 876420..876656 (+) 237 WP_003697965.1 hypothetical protein -
  NQ504_RS04410 (NQ504_04410) - 876822..877199 (+) 378 WP_003693606.1 hypothetical protein -
  NQ504_RS04415 (NQ504_04415) - 877163..877249 (+) 87 Protein_826 hypothetical protein -
  NQ504_RS04420 (NQ504_04420) - 877259..877486 (+) 228 WP_003693607.1 hypothetical protein -
  NQ504_RS04425 (NQ504_04425) - 877501..877899 (+) 399 WP_003697967.1 anthranilate synthase component II -
  NQ504_RS04430 (NQ504_04430) trpD 877903..878913 (+) 1011 WP_003693609.1 anthranilate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 39246.71 Da        Isoelectric Point: 5.9410

>NTDB_id=715866 NQ504_RS04395 WP_003693601.1 873231..874319(+) (recA) [Ligilactobacillus ruminis strain ATCC 25644]
MSDDRKAALDNALKKIEKNFGKGSIMRMGDKADTRISTVPTGSLSLDEALGVGGFPRGRIVEIYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENALDPAYAQALGVNIDELLLSQPDTGEQGLEICDALVSSGAIDIVVVDSVAALVPRAEIEGEMGD
THVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQIKDGSDIIGNR
VRIKVVKNKVAPPFKTAEVDIMYGEGISKTGELIDMAVEKEIVKKSGSWFSYGEERIGQGRENAKKYMKEHPDIMEEVTK
KVRAAYGIDDKQDDEQLELKIDDEKGTKSAAKSSKKVEDSTK

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=715866 NQ504_RS04395 WP_003693601.1 873231..874319(+) (recA) [Ligilactobacillus ruminis strain ATCC 25644]
GTGAGCGACGATAGAAAAGCGGCATTAGATAATGCTCTTAAGAAAATTGAAAAAAATTTTGGTAAAGGCTCCATTATGAG
GATGGGCGATAAAGCTGATACCAGGATTTCGACCGTGCCAACTGGCTCGCTTTCATTGGATGAAGCGTTGGGAGTCGGTG
GTTTCCCACGTGGGAGGATTGTTGAAATCTACGGTCCTGAAAGTTCTGGTAAGACAACTGTTGCATTGCATGCAGTTGCT
GAAGTTCAAAAACGAGGCGGAACTGCAGCTTACATTGATGCTGAAAATGCTCTTGATCCTGCTTATGCACAGGCATTGGG
TGTTAATATCGACGAATTATTGCTGTCGCAGCCTGACACGGGAGAACAGGGACTTGAGATTTGTGACGCATTGGTTTCAT
CCGGTGCGATTGACATAGTTGTTGTCGATTCGGTCGCTGCTTTGGTTCCACGAGCAGAAATTGAAGGCGAAATGGGCGAT
ACGCACGTGGGATTGCAGGCACGTTTGATGTCGCAAGCTTTACGAAAACTTTCCGGCACAATCAATAAAACCAAGACGAT
TGCTTTGTTCATAAATCAGATTCGTGAAAAGGTCGGCGTCATGTTCGGCAATCCTGAGACAACTCCTGGCGGTCGTGCAT
TGAAGTTTTATTCGACGGTACGTTTAGAAGTGCGCCGTGCTGAACAGATCAAAGACGGATCAGATATTATTGGGAATCGT
GTTCGTATCAAGGTTGTCAAAAATAAGGTTGCGCCTCCGTTCAAGACGGCTGAAGTTGACATCATGTATGGTGAAGGGAT
TTCCAAGACCGGTGAATTGATTGATATGGCAGTTGAAAAAGAAATCGTCAAGAAGAGCGGTTCGTGGTTCTCATATGGTG
AAGAACGTATTGGTCAAGGGCGTGAAAACGCAAAGAAATACATGAAGGAACATCCGGATATCATGGAAGAAGTTACGAAG
AAAGTCAGAGCAGCGTACGGAATTGATGATAAGCAGGATGATGAGCAGCTTGAATTGAAAATTGATGATGAAAAAGGTAC
AAAGTCGGCCGCTAAATCATCAAAAAAAGTTGAAGACAGTACAAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F7QXA0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.471

96.133

0.793
  recA Bacillus subtilis subsp. subtilis str. 168

77.982

90.331

0.704
  recA Streptococcus mutans UA159

65.169

98.343

0.641
  recA Streptococcus pneumoniae TIGR4

68.862

92.265

0.635
  recA Streptococcus pneumoniae R6

68.862

92.265

0.635
  recA Streptococcus pneumoniae Rx1

68.862

92.265

0.635
  recA Streptococcus pneumoniae D39

68.862

92.265

0.635
  recA Lactococcus lactis subsp. cremoris KW2

69.486

91.436

0.635
  recA Streptococcus pyogenes NZ131

68.58

91.436

0.627
  recA Streptococcus mitis NCTC 12261

67.964

92.265

0.627
  recA Streptococcus mitis SK321

67.665

92.265

0.624
  recA Neisseria gonorrhoeae strain FA1090

64.242

91.16

0.586
  recA Neisseria gonorrhoeae MS11

64.242

91.16

0.586
  recA Neisseria gonorrhoeae MS11

64.242

91.16

0.586
  recA Ralstonia pseudosolanacearum GMI1000

61.128

93.094

0.569
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.706

93.923

0.561
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.539

89.227

0.558
  recA Vibrio cholerae strain A1552

62.539

89.227

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

89.227

0.555
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.28

90.608

0.555
  recA Glaesserella parasuis strain SC1401

62.305

88.674

0.552
  recA Helicobacter pylori 26695

57.602

94.475

0.544
  recA Helicobacter pylori strain NCTC11637

57.602

94.475

0.544
  recA Pseudomonas stutzeri DSM 10701

60.494

89.503

0.541
  recA Acinetobacter baylyi ADP1

60.372

89.227

0.539
  recA Acinetobacter baumannii D1279779

59.752

89.227

0.533