Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NQ504_RS04390 Genome accession   NZ_CP102284
Coordinates   871872..873110 (+) Length   412 a.a.
NCBI ID   WP_003693599.1    Uniprot ID   F7QX99
Organism   Ligilactobacillus ruminis strain ATCC 25644     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 866872..878110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ504_RS04370 (NQ504_04370) yfmH 868052..869356 (+) 1305 WP_003697960.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  NQ504_RS04375 (NQ504_04375) ymfI 869353..870081 (+) 729 WP_003693593.1 elongation factor P 5-aminopentanone reductase -
  NQ504_RS04380 (NQ504_04380) - 870185..871072 (+) 888 WP_003697962.1 helix-turn-helix domain-containing protein -
  NQ504_RS04385 (NQ504_04385) pgsA 871141..871728 (+) 588 WP_003693597.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NQ504_RS04390 (NQ504_04390) cinA 871872..873110 (+) 1239 WP_003693599.1 competence/damage-inducible protein A Machinery gene
  NQ504_RS04395 (NQ504_04395) recA 873231..874319 (+) 1089 WP_003693601.1 recombinase RecA Machinery gene
  NQ504_RS04400 (NQ504_04400) rny 874652..876208 (+) 1557 WP_035158700.1 ribonuclease Y -
  NQ504_RS04405 (NQ504_04405) - 876420..876656 (+) 237 WP_003697965.1 hypothetical protein -
  NQ504_RS04410 (NQ504_04410) - 876822..877199 (+) 378 WP_003693606.1 hypothetical protein -
  NQ504_RS04415 (NQ504_04415) - 877163..877249 (+) 87 Protein_826 hypothetical protein -
  NQ504_RS04420 (NQ504_04420) - 877259..877486 (+) 228 WP_003693607.1 hypothetical protein -
  NQ504_RS04425 (NQ504_04425) - 877501..877899 (+) 399 WP_003697967.1 anthranilate synthase component II -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45469.35 Da        Isoelectric Point: 4.6781

>NTDB_id=715865 NQ504_RS04390 WP_003693599.1 871872..873110(+) (cinA) [Ligilactobacillus ruminis strain ATCC 25644]
MHAEVISVGTEILLGQITDTNSTFISQRLAELGIDVYFKTVVGDNEKRLLQALEIASGRSDMVILSGGLGPTKDDLTKQT
VAKFLNCGLLTDKDALEYIEEYYRQNNRKMTDNNLLQAKYLEGSISLPNESGMAVGSYYQNQNGPDFILLPGPPSEMRPM
FDKQVMHRLKENYAREHLLFSRVLRFYGIGESQLVTELDDLINGQTNPTIAPYAKVGEVTLRLTAQADSKESAKEILDET
EQVISKRVGQYLYGYGDDNSLPKVVVEKLKQRGLTVSASESLTGGSFQKAVTDIAGSSQIFPGGFVTYSASAKENLLDIP
KEIIIENGVVSEATAKWMAERTRIKMDTDFGVSFTGVAGPDTLEGNPAGTVWIGISQRDRQTAAFEYHFYGDRDAVRIRS
VLAGFDLINNEL

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=715865 NQ504_RS04390 WP_003693599.1 871872..873110(+) (cinA) [Ligilactobacillus ruminis strain ATCC 25644]
ATGCATGCAGAAGTTATTTCGGTCGGAACGGAAATTTTGTTAGGCCAGATTACGGATACAAACTCGACGTTTATCAGCCA
ACGTTTGGCCGAACTGGGGATTGACGTTTATTTTAAAACGGTTGTCGGGGACAATGAAAAAAGATTGCTTCAAGCTTTGG
AGATTGCTTCGGGCAGGTCTGACATGGTCATTTTATCCGGTGGACTCGGGCCGACAAAAGATGACCTTACGAAGCAAACC
GTAGCCAAGTTTTTAAATTGCGGACTTTTGACGGATAAGGATGCTTTAGAGTACATTGAGGAGTATTATCGTCAAAATAA
TCGGAAAATGACCGATAACAATCTGTTGCAGGCAAAATATCTCGAGGGTTCGATTTCGCTTCCGAATGAAAGCGGCATGG
CGGTAGGCAGCTATTATCAAAATCAAAACGGGCCTGACTTTATTTTGCTCCCCGGACCTCCAAGCGAAATGCGCCCCATG
TTTGACAAGCAAGTAATGCACAGATTGAAAGAAAACTATGCAAGAGAACATCTGCTTTTTTCACGAGTTTTGAGATTTTA
CGGTATTGGCGAATCACAATTGGTGACTGAATTGGATGATTTGATCAACGGACAAACGAATCCGACGATTGCGCCTTACG
CTAAAGTGGGCGAGGTCACGCTTCGTTTGACTGCTCAGGCAGATTCAAAAGAAAGCGCAAAAGAAATTCTTGATGAAACG
GAGCAAGTTATTTCGAAACGCGTGGGTCAATATCTTTATGGGTATGGCGATGACAACAGTCTTCCGAAGGTTGTCGTTGA
AAAACTAAAACAAAGAGGATTGACGGTTTCCGCTTCTGAAAGTTTAACTGGCGGTTCATTCCAGAAAGCAGTTACTGACA
TTGCCGGTTCTTCACAGATTTTTCCCGGAGGATTCGTGACCTATTCTGCTTCCGCCAAGGAAAACCTGTTGGACATCCCG
AAGGAAATAATCATTGAAAACGGTGTCGTCAGCGAAGCAACCGCAAAGTGGATGGCTGAACGAACAAGAATCAAAATGGA
TACGGATTTTGGCGTTTCATTTACGGGCGTTGCCGGGCCTGATACGTTGGAGGGAAATCCCGCAGGAACTGTTTGGATCG
GGATATCGCAGCGAGACAGGCAGACTGCTGCTTTTGAATATCATTTTTATGGGGATCGAGATGCGGTTCGCATTCGCAGC
GTTTTAGCCGGATTCGACCTGATTAACAATGAACTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F7QX99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

52.732

100

0.539
  cinA Streptococcus mitis SK321

52.494

100

0.536
  cinA Streptococcus pneumoniae TIGR4

52.009

100

0.534
  cinA Streptococcus pneumoniae R6

51.773

100

0.532
  cinA Streptococcus pneumoniae Rx1

51.773

100

0.532
  cinA Streptococcus pneumoniae D39

51.537

100

0.529
  cinA Streptococcus mutans UA159

51.683

100

0.522
  cinA Bacillus subtilis subsp. subtilis str. 168

48.403

98.786

0.478
  cinA Streptococcus suis isolate S10

42.043

100

0.43