Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   NQZ91_RS06990 Genome accession   NZ_CP102145
Coordinates   1405522..1406706 (-) Length   394 a.a.
NCBI ID   WP_105110232.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1400522..1411706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS06940 (NQZ91_06940) - 1400757..1401056 (-) 300 WP_004195491.1 50S ribosomal protein L23 -
  NQZ91_RS06945 (NQZ91_06945) rplD 1401056..1401679 (-) 624 WP_004195490.1 50S ribosomal protein L4 -
  NQZ91_RS06950 (NQZ91_06950) rplC 1401704..1402330 (-) 627 WP_011921686.1 50S ribosomal protein L3 -
  NQZ91_RS06955 (NQZ91_06955) rpsJ 1402410..1402718 (-) 309 WP_002939332.1 30S ribosomal protein S10 -
  NQZ91_RS06960 (NQZ91_06960) - 1403011..1403318 (+) 308 Protein_1385 IS481 family transposase -
  NQZ91_RS06965 (NQZ91_06965) - 1403278..1403649 (-) 372 WP_105111773.1 nucleotidyltransferase family protein -
  NQZ91_RS06970 (NQZ91_06970) - 1403845..1404162 (-) 318 WP_004195480.1 DUF1292 domain-containing protein -
  NQZ91_RS06975 (NQZ91_06975) ruvX 1404174..1404593 (-) 420 WP_105138617.1 Holliday junction resolvase RuvX -
  NQZ91_RS06980 (NQZ91_06980) - 1404593..1404859 (-) 267 WP_105111771.1 IreB family regulatory phosphoprotein -
  NQZ91_RS06985 (NQZ91_06985) spx 1404966..1405364 (-) 399 WP_105111770.1 transcriptional regulator Spx -
  NQZ91_RS06990 (NQZ91_06990) recA 1405522..1406706 (-) 1185 WP_105110232.1 recombinase RecA Machinery gene
  NQZ91_RS06995 (NQZ91_06995) cinA 1406758..1407939 (-) 1182 WP_105122397.1 competence/damage-inducible protein A Machinery gene
  NQZ91_RS07000 (NQZ91_07000) - 1408009..1408584 (-) 576 WP_249338965.1 DNA-3-methyladenine glycosylase I -
  NQZ91_RS07005 (NQZ91_07005) - 1408584..1409225 (-) 642 WP_125266299.1 hypothetical protein -
  NQZ91_RS07010 (NQZ91_07010) ruvA 1409234..1409824 (-) 591 WP_105122400.1 Holliday junction branch migration protein RuvA -

Sequence


Protein


Download         Length: 394 a.a.        Molecular weight: 42254.96 Da        Isoelectric Point: 4.6727

>NTDB_id=714944 NQZ91_RS06990 WP_105110232.1 1405522..1406706(-) (recA) [Streptococcus suis strain DNS20]
MAKKPSKKLEEITKKYGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIVEIYG
PESSGKTTVALHAVAQCQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVR
GNTQIKGTGDQKDQNVGKETKVKVVKNKVAPPFKEVVVEIMYGEGISQTGELIQIGSDLGIIKKAGAWYSYNDEKIGQGS
ENAKKFLAENPEIFAEIDRKIRIHYGLIEDDNAPAETADTKAEATEEVPATETETNVELEEVVLDLDGGIELEE

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=714944 NQZ91_RS06990 WP_105110232.1 1405522..1406706(-) (recA) [Streptococcus suis strain DNS20]
TTGGCTAAGAAACCATCGAAAAAATTAGAAGAAATTACTAAAAAATATGGAGATGAGCGCAAAAAAGCTTTAGATGACGC
TCTCAAGTCTATCGAAAAAGACTTTGGTAAGGGGGCAGTGATGCGCCTGGGTGAGCGTGCCGAGCAAAAGGTTCAGGTCA
TGAGCTCTGGTAGCTTGTCGATTGACATCGCTCTGGGCGCTGGTGGCTATCCGAAGGGTCGTATCGTCGAGATTTACGGT
CCAGAATCATCTGGTAAGACGACGGTTGCCCTTCATGCGGTTGCCCAATGTCAAAAAGAAGGCGGTATTGCAGCCTTTAT
CGATGCCGAGCATGCTTTGGATCCTGCTTATGCAGCGGCTCTAGGTGTTAACATTGATGAATTGCTCTTGTCGCAGCCGG
ATTCTGGTGAGCAGGGTTTGGAAATCGCTGGCAAATTGATTGACTCTGGTGCTGTTGATTTGGTCGTTGTCGACTCAGTT
GCGGCTCTTGTACCGCGTGCGGAGATTGACGGTGACATCGGTGATAGCCACGTTGGTCTGCAGGCGCGTATGATGTCTCA
GGCCATGCGCAAATTGGGTGCATCAATCAACAAAACCAAGACCATTGCTATTTTCATCAACCAACTCCGTGAAAAAGTGG
GTGTCATGTTTGGTAACCCAGAAACCACGCCGGGTGGTCGTGCCTTGAAGTTCTATGCCTCTGTTCGTTTGGATGTTCGT
GGCAATACCCAAATCAAGGGTACGGGTGATCAGAAAGACCAGAACGTTGGTAAGGAAACCAAGGTCAAGGTCGTGAAAAA
CAAGGTCGCTCCGCCATTTAAAGAAGTTGTCGTGGAAATCATGTACGGAGAAGGGATTTCGCAGACGGGCGAGTTGATTC
AAATCGGTAGCGACTTGGGTATCATCAAAAAAGCAGGTGCTTGGTATTCTTACAACGATGAGAAAATCGGTCAAGGTTCG
GAAAATGCTAAGAAGTTCTTGGCTGAAAATCCAGAAATTTTTGCAGAGATCGACCGCAAAATCCGTATTCACTACGGTTT
GATTGAAGATGATAACGCACCAGCTGAAACGGCTGATACAAAGGCGGAAGCTACTGAAGAAGTTCCTGCTACTGAAACAG
AAACCAATGTAGAATTGGAAGAAGTAGTACTTGACCTCGATGGCGGCATCGAATTAGAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae R6

83.461

99.746

0.832

  recA Streptococcus pneumoniae TIGR4

83.461

99.746

0.832

  recA Streptococcus pneumoniae Rx1

83.461

99.746

0.832

  recA Streptococcus pneumoniae D39

83.461

99.746

0.832

  recA Streptococcus mutans UA159

83.249

100

0.832

  recA Streptococcus mitis SK321

82.697

99.746

0.825

  recA Streptococcus mitis NCTC 12261

82.697

99.746

0.825

  recA Streptococcus pyogenes NZ131

81.472

100

0.815

  recA Lactococcus lactis subsp. cremoris KW2

76.638

89.086

0.683

  recA Bacillus subtilis subsp. subtilis str. 168

67.964

84.772

0.576

  recA Latilactobacillus sakei subsp. sakei 23K

67.273

83.756

0.563

  recA Neisseria gonorrhoeae MS11

62.84

84.01

0.528

  recA Neisseria gonorrhoeae MS11

62.84

84.01

0.528

  recA Neisseria gonorrhoeae strain FA1090

62.84

84.01

0.528

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.704

86.548

0.525

  recA Glaesserella parasuis strain SC1401

60.294

86.294

0.52

  recA Acinetobacter baumannii D1279779

62.883

82.741

0.52

  recA Acinetobacter baylyi ADP1

62.462

82.487

0.515

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.778

84.772

0.515

  recA Vibrio cholerae strain A1552

62.154

82.487

0.513

  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.154

82.487

0.513

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.517

84.01

0.5

  recA Pseudomonas stutzeri DSM 10701

60.308

82.487

0.497

  recA Ralstonia pseudosolanacearum GMI1000

60.883

80.457

0.49

  recA Helicobacter pylori strain NCTC11637

58.589

82.741

0.485

  recA Helicobacter pylori 26695

58.589

82.741

0.485