Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NQZ91_RS06995 Genome accession   NZ_CP102145
Coordinates   1406758..1407939 (-) Length   393 a.a.
NCBI ID   WP_105122397.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 1401758..1412939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS06955 (NQZ91_06955) rpsJ 1402410..1402718 (-) 309 WP_002939332.1 30S ribosomal protein S10 -
  NQZ91_RS06960 (NQZ91_06960) - 1403011..1403318 (+) 308 Protein_1385 IS481 family transposase -
  NQZ91_RS06965 (NQZ91_06965) - 1403278..1403649 (-) 372 WP_105111773.1 nucleotidyltransferase family protein -
  NQZ91_RS06970 (NQZ91_06970) - 1403845..1404162 (-) 318 WP_004195480.1 DUF1292 domain-containing protein -
  NQZ91_RS06975 (NQZ91_06975) ruvX 1404174..1404593 (-) 420 WP_105138617.1 Holliday junction resolvase RuvX -
  NQZ91_RS06980 (NQZ91_06980) - 1404593..1404859 (-) 267 WP_105111771.1 IreB family regulatory phosphoprotein -
  NQZ91_RS06985 (NQZ91_06985) spx 1404966..1405364 (-) 399 WP_105111770.1 transcriptional regulator Spx -
  NQZ91_RS06990 (NQZ91_06990) recA 1405522..1406706 (-) 1185 WP_105110232.1 recombinase RecA Machinery gene
  NQZ91_RS06995 (NQZ91_06995) cinA 1406758..1407939 (-) 1182 WP_105122397.1 competence/damage-inducible protein A Machinery gene
  NQZ91_RS07000 (NQZ91_07000) - 1408009..1408584 (-) 576 WP_249338965.1 DNA-3-methyladenine glycosylase I -
  NQZ91_RS07005 (NQZ91_07005) - 1408584..1409225 (-) 642 WP_125266299.1 hypothetical protein -
  NQZ91_RS07010 (NQZ91_07010) ruvA 1409234..1409824 (-) 591 WP_105122400.1 Holliday junction branch migration protein RuvA -
  NQZ91_RS07015 (NQZ91_07015) mutL 1409831..1411780 (-) 1950 WP_257117212.1 DNA mismatch repair endonuclease MutL -
  NQZ91_RS07020 (NQZ91_07020) - 1411906..1412082 (-) 177 WP_161942998.1 hypothetical protein -
  NQZ91_RS07025 (NQZ91_07025) - 1412127..1412573 (-) 447 WP_257117213.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 42682.85 Da        Isoelectric Point: 4.7426

>NTDB_id=714945 NQZ91_RS06995 WP_105122397.1 1406758..1407939(-) (cinA) [Streptococcus suis strain DNS20]
MKAELIAVGTEILTGQIVNTNAQFLSEKCAELGIDVYFHTAVGDNEKRLLSVLEIASKRSDMVILCGGLGPTEDDLTKQT
LAQFLGRDLVFDKRAVDKLNRFFASRPGRIRTPNNERQAQLVAGSIPLHNPTGLAVGSMIEQDGVTYIVLPGPPSELKAM
FAQSLLPLLTQSEQQLYSRVLRFFGIGESQLVTILADLIDQQTDPTLAPYAKTGEVTLRLSTKATSQVEADAKLAQLEKT
ILERDNLAKYLYAYGEDNSLAKTVADLLVDKQQTLSILEQGTGGQLQAELSATMTDQMYFSGGQVRGQGPISSDSLVTEA
SQLRKELATDLTLAVSVAVKPQSTVDNVLAKVSLVLVSTSGIVQKEVDLGGYSWLYLRQLACLQALDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=714945 NQZ91_RS06995 WP_105122397.1 1406758..1407939(-) (cinA) [Streptococcus suis strain DNS20]
ATGAAAGCAGAACTCATCGCCGTAGGCACTGAAATTTTGACCGGTCAGATTGTCAATACCAACGCGCAATTTCTATCTGA
AAAATGTGCTGAATTGGGTATTGACGTCTATTTTCATACAGCAGTAGGCGATAATGAAAAGCGTCTTTTGTCGGTGTTGG
AGATTGCCAGCAAGCGAAGTGATATGGTCATTCTCTGTGGCGGTTTGGGACCGACGGAGGACGATTTGACCAAGCAGACC
CTGGCTCAGTTTTTAGGACGCGACTTGGTCTTTGACAAGAGGGCCGTGGACAAGCTGAACCGCTTTTTTGCCAGTCGTCC
CGGTCGTATTCGCACACCCAATAATGAGCGTCAGGCTCAATTGGTGGCTGGTTCTATTCCCTTGCACAATCCCACAGGGC
TGGCTGTAGGGAGTATGATTGAACAAGACGGCGTTACCTATATTGTCTTGCCAGGACCGCCTAGCGAACTCAAAGCCATG
TTTGCCCAGAGTTTGCTGCCGCTGTTGACCCAATCCGAGCAACAACTCTATTCGCGGGTCTTGAGGTTCTTTGGTATCGG
CGAGAGTCAGTTGGTTACTATCTTGGCAGACTTGATTGACCAACAGACGGACCCGACTCTAGCCCCTTATGCTAAAACAG
GGGAAGTCACCCTGCGCCTGTCTACCAAGGCGACCAGTCAGGTAGAGGCAGATGCCAAACTAGCCCAGCTAGAAAAGACG
ATTCTGGAGCGAGATAATTTAGCAAAATACCTATATGCCTATGGTGAGGACAATAGTCTGGCTAAAACGGTTGCGGATTT
GTTGGTTGACAAGCAGCAAACCTTGTCCATTTTGGAGCAGGGAACGGGAGGTCAGTTGCAAGCGGAATTGAGCGCAACCA
TGACAGACCAGATGTATTTTAGCGGGGGTCAGGTCAGAGGTCAGGGTCCAATCAGCTCGGACAGCTTGGTGACAGAAGCC
AGTCAGTTGCGGAAGGAATTGGCGACAGATTTGACTCTGGCTGTTTCGGTGGCTGTCAAACCCCAATCGACTGTTGACAA
CGTCCTTGCCAAGGTCAGTCTGGTCTTGGTCAGCACCTCTGGGATTGTCCAAAAAGAAGTGGATTTAGGGGGGTATTCAT
GGCTCTATCTGCGTCAGTTAGCTTGCCTGCAGGCCTTAGACTTTGTACGAAATACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

78.372

100

0.784
  cinA Streptococcus mitis NCTC 12261

55.396

100

0.588
  cinA Streptococcus mutans UA159

55.961

100

0.585
  cinA Streptococcus mitis SK321

54.916

100

0.583
  cinA Streptococcus pneumoniae TIGR4

54.676

100

0.58
  cinA Streptococcus pneumoniae Rx1

54.676

100

0.58
  cinA Streptococcus pneumoniae R6

54.676

100

0.58
  cinA Streptococcus pneumoniae D39

54.436

100

0.578
  cinA Bacillus subtilis subsp. subtilis str. 168

47.557

78.117

0.372