Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | NF392_RS07420 | Genome accession | NZ_CP102089 |
| Coordinates | 1570368..1571420 (-) | Length | 350 a.a. |
| NCBI ID | WP_023350375.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. capitis strain H17 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1568807..1632323 | 1570368..1571420 | within | 0 |
Gene organization within MGE regions
Location: 1568807..1632323
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NF392_RS07420 | recA | 1570368..1571420 (-) | 1053 | WP_023350375.1 | recombinase RecA | Machinery gene |
| NF392_RS07425 | - | 1571589..1572737 (-) | 1149 | WP_023350376.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| NF392_RS07430 | pgsA | 1572880..1573461 (-) | 582 | WP_023350377.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| NF392_RS07435 | - | 1573489..1573881 (-) | 393 | WP_002436354.1 | helix-turn-helix domain-containing protein | - |
| NF392_RS07440 | - | 1573900..1574727 (-) | 828 | WP_002436330.1 | YmfK family protein | - |
| NF392_RS07445 | ymfI | 1574886..1575593 (-) | 708 | WP_023350378.1 | elongation factor P 5-aminopentanone reductase | - |
| NF392_RS07450 | yfmH | 1575593..1576879 (-) | 1287 | WP_023350379.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| NF392_RS07455 | yfmF | 1576879..1578153 (-) | 1275 | WP_023350380.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| NF392_RS07460 | - | 1578195..1578905 (-) | 711 | WP_023350381.1 | GntR family transcriptional regulator | - |
| NF392_RS12115 | - | 1578908..1580368 (-) | 1461 | Protein_1436 | DNA translocase FtsK | - |
| NF392_RS12120 | - | 1580468..1581328 (-) | 861 | Protein_1437 | DNA translocase FtsK 4TM domain-containing protein | - |
| NF392_RS07470 | rnjB | 1581586..1583259 (-) | 1674 | WP_002469869.1 | ribonuclease J2 | - |
| NF392_RS07475 | pnp | 1583493..1585592 (-) | 2100 | WP_145350199.1 | polyribonucleotide nucleotidyltransferase | - |
| NF392_RS07480 | rpsO | 1585726..1585995 (-) | 270 | WP_002436359.1 | 30S ribosomal protein S15 | - |
| NF392_RS07485 | ribF | 1586117..1587088 (-) | 972 | WP_002436322.1 | riboflavin biosynthesis protein RibF | - |
| NF392_RS07490 | truB | 1587104..1588021 (-) | 918 | WP_023350385.1 | tRNA pseudouridine(55) synthase TruB | - |
| NF392_RS07495 | rbfA | 1588170..1588520 (-) | 351 | WP_002436301.1 | 30S ribosome-binding factor RbfA | - |
| NF392_RS07500 | infB | 1588677..1590851 (-) | 2175 | WP_260832650.1 | translation initiation factor IF-2 | - |
| NF392_RS07505 | - | 1590856..1591173 (-) | 318 | WP_002436350.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| NF392_RS07510 | rnpM | 1591170..1591454 (-) | 285 | WP_002436310.1 | RNase P modulator RnpM | - |
| NF392_RS07515 | nusA | 1591471..1592694 (-) | 1224 | WP_002436342.1 | transcription termination factor NusA | - |
| NF392_RS07520 | rimP | 1592715..1593182 (-) | 468 | WP_002436317.1 | ribosome maturation factor RimP | - |
| NF392_RS07525 | - | 1593407..1597717 (-) | 4311 | WP_087671603.1 | PolC-type DNA polymerase III | - |
| NF392_RS07530 | - | 1597973..1599676 (-) | 1704 | WP_049326556.1 | proline--tRNA ligase | - |
| NF392_RS07535 | rseP | 1599696..1600982 (-) | 1287 | WP_023350389.1 | RIP metalloprotease RseP | - |
| NF392_RS07540 | - | 1601222..1602004 (-) | 783 | WP_002436308.1 | phosphatidate cytidylyltransferase | - |
| NF392_RS07545 | - | 1602008..1602778 (-) | 771 | WP_023350390.1 | isoprenyl transferase | - |
| NF392_RS07550 | frr | 1603059..1603613 (-) | 555 | WP_002436295.1 | ribosome recycling factor | - |
| NF392_RS07555 | pyrH | 1603630..1604352 (-) | 723 | WP_002436299.1 | UMP kinase | - |
| NF392_RS07560 | tsf | 1604489..1605367 (-) | 879 | WP_030064793.1 | translation elongation factor Ts | - |
| NF392_RS07565 | rpsB | 1605518..1606306 (-) | 789 | WP_002436327.1 | 30S ribosomal protein S2 | - |
| NF392_RS07570 | codY | 1606560..1607333 (-) | 774 | WP_002436324.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| NF392_RS07575 | hslU | 1607356..1608759 (-) | 1404 | WP_023350392.1 | ATP-dependent protease ATPase subunit HslU | - |
| NF392_RS07580 | hslV | 1608843..1609385 (-) | 543 | WP_023350393.1 | ATP-dependent protease subunit HslV | - |
| NF392_RS07585 | xerC | 1609389..1610279 (-) | 891 | WP_023350394.1 | tyrosine recombinase XerC | - |
| NF392_RS07590 | trmFO | 1610516..1611823 (-) | 1308 | WP_023350395.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| NF392_RS07595 | topA | 1611849..1613924 (-) | 2076 | WP_030064789.1 | type I DNA topoisomerase | - |
| NF392_RS07600 | dprA | 1614102..1614974 (-) | 873 | WP_023350397.1 | DNA-processing protein DprA | Machinery gene |
| NF392_RS07605 | sucD | 1615200..1616108 (-) | 909 | WP_002436344.1 | succinate--CoA ligase subunit alpha | - |
| NF392_RS07610 | sucC | 1616130..1617296 (-) | 1167 | WP_002436291.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| NF392_RS07615 | - | 1617404..1618174 (-) | 771 | WP_023350398.1 | ribonuclease HII | - |
| NF392_RS07620 | ylqF | 1618158..1619041 (-) | 884 | Protein_1468 | ribosome biogenesis GTPase YlqF | - |
| NF392_RS07625 | - | 1619321..1621921 (+) | 2601 | WP_023350400.1 | YfhO family protein | - |
| NF392_RS07630 | - | 1621914..1624520 (+) | 2607 | WP_023350401.1 | YfhO family protein | - |
| NF392_RS07635 | - | 1625000..1625206 (+) | 207 | WP_226859621.1 | hypothetical protein | - |
| NF392_RS07640 | - | 1625246..1625584 (+) | 339 | WP_023350404.1 | hypothetical protein | - |
| NF392_RS07645 | rplS | 1626161..1626511 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| NF392_RS07650 | trmD | 1626617..1627354 (-) | 738 | WP_023350405.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| NF392_RS07655 | rimM | 1627354..1627857 (-) | 504 | WP_023350406.1 | ribosome maturation factor RimM | - |
| NF392_RS07660 | rpsP | 1628120..1628395 (-) | 276 | WP_002453071.1 | 30S ribosomal protein S16 | - |
| NF392_RS07665 | ffh | 1628823..1630190 (-) | 1368 | WP_002435148.1 | signal recognition particle protein | - |
| NF392_RS07670 | - | 1630220..1630552 (-) | 333 | WP_002435170.1 | putative DNA-binding protein | - |
| NF392_RS07675 | ftsY | 1630539..1631798 (-) | 1260 | WP_023350407.1 | signal recognition particle-docking protein FtsY | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37913.85 Da Isoelectric Point: 5.0098
>NTDB_id=714265 NF392_RS07420 WP_023350375.1 1570368..1571420(-) (recA) [Staphylococcus capitis subsp. capitis strain H17]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVGKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVGKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
Nucleotide
Download Length: 1053 bp
>NTDB_id=714265 NF392_RS07420 WP_023350375.1 1570368..1571420(-) (recA) [Staphylococcus capitis subsp. capitis strain H17]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACATGCACTTGATCCTGTATACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGACATCGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAACTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAATGACATCGTTGGTAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACTTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACATGCACTTGATCCTGTATACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGACATCGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAACTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAATGACATCGTTGGTAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACTTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.