Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NF392_RS07600 Genome accession   NZ_CP102089
Coordinates   1614102..1614974 (-) Length   290 a.a.
NCBI ID   WP_023350397.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. capitis strain H17     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1568807..1632323 1614102..1614974 within 0


Gene organization within MGE regions


Location: 1568807..1632323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF392_RS07420 recA 1570368..1571420 (-) 1053 WP_023350375.1 recombinase RecA Machinery gene
  NF392_RS07425 - 1571589..1572737 (-) 1149 WP_023350376.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  NF392_RS07430 pgsA 1572880..1573461 (-) 582 WP_023350377.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NF392_RS07435 - 1573489..1573881 (-) 393 WP_002436354.1 helix-turn-helix domain-containing protein -
  NF392_RS07440 - 1573900..1574727 (-) 828 WP_002436330.1 YmfK family protein -
  NF392_RS07445 ymfI 1574886..1575593 (-) 708 WP_023350378.1 elongation factor P 5-aminopentanone reductase -
  NF392_RS07450 yfmH 1575593..1576879 (-) 1287 WP_023350379.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  NF392_RS07455 yfmF 1576879..1578153 (-) 1275 WP_023350380.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  NF392_RS07460 - 1578195..1578905 (-) 711 WP_023350381.1 GntR family transcriptional regulator -
  NF392_RS12115 - 1578908..1580368 (-) 1461 Protein_1436 DNA translocase FtsK -
  NF392_RS12120 - 1580468..1581328 (-) 861 Protein_1437 DNA translocase FtsK 4TM domain-containing protein -
  NF392_RS07470 rnjB 1581586..1583259 (-) 1674 WP_002469869.1 ribonuclease J2 -
  NF392_RS07475 pnp 1583493..1585592 (-) 2100 WP_145350199.1 polyribonucleotide nucleotidyltransferase -
  NF392_RS07480 rpsO 1585726..1585995 (-) 270 WP_002436359.1 30S ribosomal protein S15 -
  NF392_RS07485 ribF 1586117..1587088 (-) 972 WP_002436322.1 riboflavin biosynthesis protein RibF -
  NF392_RS07490 truB 1587104..1588021 (-) 918 WP_023350385.1 tRNA pseudouridine(55) synthase TruB -
  NF392_RS07495 rbfA 1588170..1588520 (-) 351 WP_002436301.1 30S ribosome-binding factor RbfA -
  NF392_RS07500 infB 1588677..1590851 (-) 2175 WP_260832650.1 translation initiation factor IF-2 -
  NF392_RS07505 - 1590856..1591173 (-) 318 WP_002436350.1 L7Ae/L30e/S12e/Gadd45 family ribosomal protein -
  NF392_RS07510 rnpM 1591170..1591454 (-) 285 WP_002436310.1 RNase P modulator RnpM -
  NF392_RS07515 nusA 1591471..1592694 (-) 1224 WP_002436342.1 transcription termination factor NusA -
  NF392_RS07520 rimP 1592715..1593182 (-) 468 WP_002436317.1 ribosome maturation factor RimP -
  NF392_RS07525 - 1593407..1597717 (-) 4311 WP_087671603.1 PolC-type DNA polymerase III -
  NF392_RS07530 - 1597973..1599676 (-) 1704 WP_049326556.1 proline--tRNA ligase -
  NF392_RS07535 rseP 1599696..1600982 (-) 1287 WP_023350389.1 RIP metalloprotease RseP -
  NF392_RS07540 - 1601222..1602004 (-) 783 WP_002436308.1 phosphatidate cytidylyltransferase -
  NF392_RS07545 - 1602008..1602778 (-) 771 WP_023350390.1 isoprenyl transferase -
  NF392_RS07550 frr 1603059..1603613 (-) 555 WP_002436295.1 ribosome recycling factor -
  NF392_RS07555 pyrH 1603630..1604352 (-) 723 WP_002436299.1 UMP kinase -
  NF392_RS07560 tsf 1604489..1605367 (-) 879 WP_030064793.1 translation elongation factor Ts -
  NF392_RS07565 rpsB 1605518..1606306 (-) 789 WP_002436327.1 30S ribosomal protein S2 -
  NF392_RS07570 codY 1606560..1607333 (-) 774 WP_002436324.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  NF392_RS07575 hslU 1607356..1608759 (-) 1404 WP_023350392.1 ATP-dependent protease ATPase subunit HslU -
  NF392_RS07580 hslV 1608843..1609385 (-) 543 WP_023350393.1 ATP-dependent protease subunit HslV -
  NF392_RS07585 xerC 1609389..1610279 (-) 891 WP_023350394.1 tyrosine recombinase XerC -
  NF392_RS07590 trmFO 1610516..1611823 (-) 1308 WP_023350395.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NF392_RS07595 topA 1611849..1613924 (-) 2076 WP_030064789.1 type I DNA topoisomerase -
  NF392_RS07600 dprA 1614102..1614974 (-) 873 WP_023350397.1 DNA-processing protein DprA Machinery gene
  NF392_RS07605 sucD 1615200..1616108 (-) 909 WP_002436344.1 succinate--CoA ligase subunit alpha -
  NF392_RS07610 sucC 1616130..1617296 (-) 1167 WP_002436291.1 ADP-forming succinate--CoA ligase subunit beta -
  NF392_RS07615 - 1617404..1618174 (-) 771 WP_023350398.1 ribonuclease HII -
  NF392_RS07620 ylqF 1618158..1619041 (-) 884 Protein_1468 ribosome biogenesis GTPase YlqF -
  NF392_RS07625 - 1619321..1621921 (+) 2601 WP_023350400.1 YfhO family protein -
  NF392_RS07630 - 1621914..1624520 (+) 2607 WP_023350401.1 YfhO family protein -
  NF392_RS07635 - 1625000..1625206 (+) 207 WP_226859621.1 hypothetical protein -
  NF392_RS07640 - 1625246..1625584 (+) 339 WP_023350404.1 hypothetical protein -
  NF392_RS07645 rplS 1626161..1626511 (-) 351 WP_002436293.1 50S ribosomal protein L19 -
  NF392_RS07650 trmD 1626617..1627354 (-) 738 WP_023350405.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  NF392_RS07655 rimM 1627354..1627857 (-) 504 WP_023350406.1 ribosome maturation factor RimM -
  NF392_RS07660 rpsP 1628120..1628395 (-) 276 WP_002453071.1 30S ribosomal protein S16 -
  NF392_RS07665 ffh 1628823..1630190 (-) 1368 WP_002435148.1 signal recognition particle protein -
  NF392_RS07670 - 1630220..1630552 (-) 333 WP_002435170.1 putative DNA-binding protein -
  NF392_RS07675 ftsY 1630539..1631798 (-) 1260 WP_023350407.1 signal recognition particle-docking protein FtsY -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33411.79 Da        Isoelectric Point: 9.7513

>NTDB_id=714267 NF392_RS07600 WP_023350397.1 1614102..1614974(-) (dprA) [Staphylococcus capitis subsp. capitis strain H17]
MIQHTLLKLYWANFATTQVHQFIKEYPEVISENALIQNKMIEDWAKRQTSSTVRRKLSLFKSLNTEVIFQEMTKMNLKYL
TYFDKHYPQLLKEIYDFPYVIFYKGNKQLFNCPHTLAVIGSRKSTLYTTQALEYLFPSFKSLKMTIISGLAYGADSIAHQ
VALKNKLPTIGVLGFGHSYHYPKSSLKTRENIERKGLVISEYPPHSPITRYKFPERNRLISGLARGLLITEAEKISGSQI
TVDCALEQNRNVYVLPGSMFNPMTKSNLLRLQEGAQVVLDECSILSDYIF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=714267 NF392_RS07600 WP_023350397.1 1614102..1614974(-) (dprA) [Staphylococcus capitis subsp. capitis strain H17]
GTGATTCAACACACTTTATTGAAGCTCTATTGGGCTAATTTCGCCACAACGCAAGTTCATCAATTTATTAAAGAATATCC
AGAAGTTATTTCAGAAAACGCACTAATTCAAAATAAGATGATTGAGGATTGGGCTAAAAGACAAACCTCATCCACAGTCA
GGAGAAAATTGAGCTTATTTAAATCACTTAATACAGAAGTTATATTTCAAGAAATGACTAAAATGAACCTCAAATATTTA
ACTTACTTTGATAAACATTATCCTCAATTACTTAAAGAAATTTATGATTTCCCATATGTAATTTTTTATAAAGGAAATAA
ACAACTATTTAATTGTCCTCATACTTTAGCTGTTATAGGCTCAAGAAAGTCAACCTTATATACAACTCAAGCTTTGGAAT
ATCTTTTCCCATCATTTAAATCACTAAAAATGACGATTATTTCAGGATTAGCATATGGTGCAGATAGTATAGCTCACCAA
GTCGCACTAAAAAATAAACTTCCAACAATAGGCGTTCTTGGCTTCGGCCATTCATATCATTATCCTAAATCATCTTTAAA
GACAAGAGAGAATATCGAACGAAAAGGACTAGTTATAAGTGAGTATCCACCTCATTCTCCCATAACCAGATATAAATTTC
CTGAAAGAAATAGATTGATTAGTGGACTCGCTCGGGGTCTATTAATTACAGAAGCAGAGAAAATAAGCGGTAGTCAAATA
ACAGTAGACTGCGCTTTAGAACAAAACCGGAATGTATATGTTTTACCAGGATCAATGTTTAATCCTATGACCAAAAGTAA
TTTACTTAGACTTCAAGAGGGGGCACAAGTCGTTTTAGATGAATGTAGTATTCTTTCAGACTACATTTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

59.028

99.31

0.586
  dprA Staphylococcus aureus MW2

59.028

99.31

0.586