Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   NPS17_RS09715 Genome accession   NZ_CP101985
Coordinates   2038443..2039594 (-) Length   383 a.a.
NCBI ID   WP_002262392.1    Uniprot ID   P27624
Organism   Streptococcus mutans strain COCC33-14R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2033443..2044594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS17_RS09675 (NPS17_09675) - 2034826..2035125 (-) 300 WP_002262384.1 DUF1292 domain-containing protein -
  NPS17_RS09680 (NPS17_09680) ruvX 2035206..2035625 (-) 420 WP_002262385.1 Holliday junction resolvase RuvX -
  NPS17_RS09685 (NPS17_09685) - 2035622..2035891 (-) 270 WP_002262386.1 IreB family regulatory phosphoprotein -
  NPS17_RS09690 (NPS17_09690) brsR 2036059..2036493 (+) 435 WP_002266979.1 bacteriocin genes transcriptional regulator BrsR Regulator
  NPS17_RS09695 (NPS17_09695) brsM 2036506..2036952 (+) 447 WP_002284633.1 bacteriocin genes regulator BrsM Regulator
  NPS17_RS09700 (NPS17_09700) - 2036943..2037142 (-) 200 Protein_1865 hypothetical protein -
  NPS17_RS09705 (NPS17_09705) - 2037283..2037708 (-) 426 WP_002266116.1 hypothetical protein -
  NPS17_RS09710 (NPS17_09710) spx 2037960..2038358 (-) 399 WP_002262391.1 transcriptional regulator Spx -
  NPS17_RS09715 (NPS17_09715) recA 2038443..2039594 (-) 1152 WP_002262392.1 recombinase RecA Machinery gene
  NPS17_RS09720 (NPS17_09720) cinA 2039634..2040890 (-) 1257 WP_002266115.1 competence/damage-inducible protein A Machinery gene
  NPS17_RS09725 (NPS17_09725) - 2041039..2041599 (-) 561 WP_258969005.1 DNA-3-methyladenine glycosylase I -
  NPS17_RS09730 (NPS17_09730) ruvA 2041681..2042274 (-) 594 WP_002266975.1 Holliday junction branch migration protein RuvA -
  NPS17_RS09735 (NPS17_09735) mutL 2042458..2044413 (-) 1956 WP_258969006.1 DNA mismatch repair endonuclease MutL -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 41420.01 Da        Isoelectric Point: 4.9881

>NTDB_id=713617 NPS17_RS09715 WP_002262392.1 2038443..2039594(-) (recA) [Streptococcus mutans strain COCC33-14R]
MAKRIKKTEEITKKFGDERKKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIVEIYGP
ESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGEQKDSNIGKETKIKVVKNKVAPPFKEAFVEIIYGEGISRTGELVKIASDLGIIQKAGAWYSYNGEKIGQGSE
NAKKFLADNPEIFDDIDHKVRVQYGLIEEDNTEEKQSSKEKETDEKADKNLVLELDDTIELED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=713617 NPS17_RS09715 WP_002262392.1 2038443..2039594(-) (recA) [Streptococcus mutans strain COCC33-14R]
TTGGCCAAAAGAATAAAAAAGACAGAAGAAATAACGAAAAAATTTGGTGATGAGCGTAAGAAAGCTCTTGATGATGCTTT
GAAAAACATCGAAAAAGATTTTGGTAAAGGTGCAGTTATGCGTCTGGGTGAACGCGCTGAACAAAAGGTTCAGGTGATGA
GTTCAGGAAGTCTGGCTCTTGATATTGCTCTTGGGGCAGGCGGTTATCCAAAAGGGCGTATCGTTGAGATTTACGGGCCA
GAATCTTCTGGTAAGACAACTGTCGCTCTTCATGCTGTTGCTCAGGCGCAAAAAGATGGCGGTATTGCCGCTTTCATTGA
TGCAGAACATGCCCTTGATCCAGCCTATGCTGCTGCTCTTGGCGTTAATATTGATGAGCTTTTGCTTTCACAACCAGATT
CAGGAGAACAGGGTCTTGAAATTGCAGGGAAATTGATTGATTCTGGCGCTGTTGATTTAGTTGTTGTTGACTCAGTGGCA
GCTTTAGTACCACGTGCGGAGATTGACGGAGATATTGGTGATAGTCATGTTGGCTTACAAGCACGCATGATGAGTCAAGC
GATGCGTAAATTATCAGCTTCAATCAATAAAACAAAAACCATTGCCATTTTTATTAATCAATTGCGGGAAAAAGTTGGTA
TTATGTTTGGTAATCCAGAAACAACCCCTGGCGGGCGTGCCTTGAAGTTTTATTCTTCTGTGCGTCTTGATGTCCGTGGC
AATACTCAAATTAAAGGAACCGGGGAACAAAAAGACAGCAATATTGGTAAAGAGACCAAAATTAAAGTTGTTAAAAATAA
AGTTGCTCCACCATTTAAGGAAGCTTTTGTAGAAATTATATATGGTGAAGGCATTTCTCGTACAGGTGAATTAGTTAAGA
TTGCCAGTGATTTGGGAATTATCCAAAAAGCTGGAGCTTGGTACTCTTATAATGGTGAAAAAATTGGGCAAGGTTCTGAA
AATGCTAAAAAATTCCTAGCTGATAATCCAGAAATTTTTGATGACATCGATCATAAAGTGCGTGTTCAATATGGTTTAAT
TGAGGAAGATAATACTGAAGAAAAACAGTCTTCTAAAGAAAAGGAAACTGATGAGAAAGCTGACAAAAACCTTGTTTTAG
AGCTGGATGATACAATTGAGCTTGAAGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB P27624

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

100

100

1

  recA Streptococcus pyogenes NZ131

87.206

100

0.872

  recA Streptococcus pneumoniae D39

83.204

100

0.841

  recA Streptococcus pneumoniae Rx1

83.204

100

0.841

  recA Streptococcus pneumoniae R6

83.204

100

0.841

  recA Streptococcus pneumoniae TIGR4

83.204

100

0.841

  recA Streptococcus mitis NCTC 12261

84.293

99.739

0.841

  recA Streptococcus mitis SK321

83.77

99.739

0.836

  recA Lactococcus lactis subsp. cremoris KW2

76.657

90.601

0.695

  recA Latilactobacillus sakei subsp. sakei 23K

68.208

90.339

0.616

  recA Bacillus subtilis subsp. subtilis str. 168

68.389

85.901

0.587

  recA Neisseria gonorrhoeae MS11

60.684

91.645

0.556

  recA Neisseria gonorrhoeae MS11

60.684

91.645

0.556

  recA Neisseria gonorrhoeae strain FA1090

60.684

91.645

0.556

  recA Acinetobacter baylyi ADP1

59.375

91.906

0.546

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.411

89.034

0.538

  recA Glaesserella parasuis strain SC1401

60.294

88.773

0.535

  recA Acinetobacter baumannii D1279779

61.585

85.64

0.527

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

84.334

0.522

  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

84.856

0.52

  recA Vibrio cholerae strain A1552

61.231

84.856

0.52

  recA Pseudomonas stutzeri DSM 10701

57.864

87.99

0.509

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.704

86.423

0.499

  recA Ralstonia pseudosolanacearum GMI1000

59.621

82.768

0.493

  recA Helicobacter pylori 26695

56.287

87.206

0.491

  recA Helicobacter pylori strain NCTC11637

56.287

87.206

0.491