Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NPA45_RS03995 Genome accession   NZ_CP101845
Coordinates   820074..821126 (+) Length   350 a.a.
NCBI ID   WP_047678675.1    Uniprot ID   A0AAP8LX93
Organism   Lacticaseibacillus rhamnosus strain Fmb14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 815074..826126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA45_RS03975 ymfI 816211..816939 (+) 729 WP_005713294.1 elongation factor P 5-aminopentanone reductase -
  NPA45_RS03980 - 817026..817961 (+) 936 WP_005688668.1 helix-turn-helix domain-containing protein -
  NPA45_RS03985 pgsA 817958..818551 (+) 594 WP_005688184.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NPA45_RS03990 cinA 818781..820022 (+) 1242 WP_047678678.1 competence/damage-inducible protein A Machinery gene
  NPA45_RS03995 recA 820074..821126 (+) 1053 WP_047678675.1 recombinase RecA Machinery gene
  NPA45_RS04000 rny 821648..823219 (+) 1572 WP_005684479.1 ribonuclease Y -
  NPA45_RS04005 - 823308..823964 (-) 657 WP_095593725.1 YigZ family protein -
  NPA45_RS04010 - 823992..825257 (+) 1266 WP_047675554.1 DEAD/DEAH box helicase -
  NPA45_RS04015 - 825416..825934 (+) 519 WP_049170722.1 ComF family protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37586.87 Da        Isoelectric Point: 5.5040

>NTDB_id=712354 NPA45_RS03995 WP_047678675.1 820074..821126(+) (recA) [Lacticaseibacillus rhamnosus strain Fmb14]
MAETERQEALATALKKIEKNFGKGAIMRMGDKVETRVSAVSSGSLAIDDALGVGGLPRGRIVEIYGPESSGKTTVALHAV
AMVQQHGGTAAYIDAENAMDPKYAAALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGAINKTKTIALFINQIREKVGIVFGNPEITPGGRALKFYATVRMEVRRSEQIKNGADIIGN
RTKIKVVKNKVAPPFKTAIVDIMYGQGISQSGELVDMAVEKDLIEKAGSWYAYQGERIGQGREHAKSYLETHEELRRTIE
KQVRLAYGMSPDHVIDQADIETDTTTSAAS

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=712354 NPA45_RS03995 WP_047678675.1 820074..821126(+) (recA) [Lacticaseibacillus rhamnosus strain Fmb14]
ATGGCAGAAACCGAACGACAGGAAGCATTGGCAACGGCGTTAAAGAAGATTGAGAAGAATTTTGGCAAAGGGGCCATTAT
GCGGATGGGGGACAAAGTGGAGACACGCGTTTCTGCTGTTTCCAGCGGATCACTTGCAATTGATGATGCACTTGGTGTTG
GTGGGCTGCCGCGCGGACGAATTGTTGAAATCTATGGTCCGGAAAGTTCCGGAAAAACGACTGTGGCCTTGCATGCAGTT
GCCATGGTTCAGCAACACGGTGGCACGGCCGCTTATATTGATGCCGAAAATGCCATGGATCCCAAATATGCGGCGGCACT
TGGCGTCAATATTGATGAGCTGTTGCTTTCACAGCCGGATACTGGTGAACAAGGATTGGAAATTGCCGATGAGCTGGTTG
CATCGGGCGCCATTGATATTTTAGTGGTTGATTCAGTGGCAGCTCTGGTACCGCGCGCAGAAATTGAAGGGGACATGGGT
GATGCACACGTTGGGTTACAGGCACGGCTAATGTCACAGGCCTTACGAAAGTTGTCTGGGGCGATCAATAAGACCAAAAC
AATTGCCTTGTTCATCAACCAGATCCGGGAAAAAGTCGGCATTGTATTCGGCAATCCTGAAATTACGCCAGGTGGTCGGG
CGCTGAAATTTTATGCTACTGTGCGTATGGAAGTGCGCCGTTCCGAGCAGATCAAAAACGGTGCCGATATTATTGGCAAT
CGCACCAAAATCAAAGTGGTTAAAAATAAAGTTGCACCGCCGTTTAAGACTGCCATTGTTGATATTATGTATGGTCAAGG
TATTTCCCAAAGTGGTGAACTTGTCGACATGGCGGTTGAAAAAGACCTCATTGAAAAGGCGGGTTCGTGGTATGCCTACC
AAGGCGAGCGCATTGGTCAAGGACGTGAGCACGCTAAAAGCTATCTTGAAACGCATGAGGAGCTGCGCCGAACCATTGAA
AAACAAGTCCGGCTTGCTTATGGAATGTCGCCGGATCACGTTATCGATCAAGCAGACATAGAGACAGATACTACCACATC
TGCTGCATCATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.121

94.286

0.774
  recA Bacillus subtilis subsp. subtilis str. 168

70.482

94.857

0.669
  recA Streptococcus pneumoniae Rx1

66.667

97.714

0.651
  recA Streptococcus pneumoniae D39

66.667

97.714

0.651
  recA Streptococcus pneumoniae R6

66.667

97.714

0.651
  recA Streptococcus pneumoniae TIGR4

66.667

97.714

0.651
  recA Streptococcus pyogenes NZ131

68.902

93.714

0.646
  recA Streptococcus mitis NCTC 12261

68.389

94

0.643
  recA Streptococcus mitis SK321

68.389

94

0.643
  recA Streptococcus mutans UA159

68.389

94

0.643
  recA Lactococcus lactis subsp. cremoris KW2

66.566

94.857

0.631
  recA Ralstonia pseudosolanacearum GMI1000

62.54

90

0.563
  recA Neisseria gonorrhoeae MS11

59.574

94

0.56
  recA Neisseria gonorrhoeae strain FA1090

59.574

94

0.56
  recA Neisseria gonorrhoeae MS11

59.574

94

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.372

92.286

0.557
  recA Acinetobacter baylyi ADP1

61.129

91.143

0.557
  recA Acinetobacter baumannii D1279779

60.815

91.143

0.554
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.27

96.286

0.551
  recA Pseudomonas stutzeri DSM 10701

59.317

92

0.546
  recA Glaesserella parasuis strain SC1401

55.362

98.571

0.546
  recA Vibrio cholerae strain A1552

59.561

91.143

0.543
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.561

91.143

0.543
  recA Helicobacter pylori strain NCTC11637

55.352

93.429

0.517
  recA Helicobacter pylori 26695

55.046

93.429

0.514
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.077

92.857

0.511