Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NPA45_RS03990 Genome accession   NZ_CP101845
Coordinates   818781..820022 (+) Length   413 a.a.
NCBI ID   WP_047678678.1    Uniprot ID   A0AAP8LX99
Organism   Lacticaseibacillus rhamnosus strain Fmb14     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 813781..825022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA45_RS03970 yfmH 814919..816211 (+) 1293 WP_047678681.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  NPA45_RS03975 ymfI 816211..816939 (+) 729 WP_005713294.1 elongation factor P 5-aminopentanone reductase -
  NPA45_RS03980 - 817026..817961 (+) 936 WP_005688668.1 helix-turn-helix domain-containing protein -
  NPA45_RS03985 pgsA 817958..818551 (+) 594 WP_005688184.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NPA45_RS03990 cinA 818781..820022 (+) 1242 WP_047678678.1 competence/damage-inducible protein A Machinery gene
  NPA45_RS03995 recA 820074..821126 (+) 1053 WP_047678675.1 recombinase RecA Machinery gene
  NPA45_RS04000 rny 821648..823219 (+) 1572 WP_005684479.1 ribonuclease Y -
  NPA45_RS04005 - 823308..823964 (-) 657 WP_095593725.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44528.18 Da        Isoelectric Point: 6.9894

>NTDB_id=712353 NPA45_RS03990 WP_047678678.1 818781..820022(+) (cinA) [Lacticaseibacillus rhamnosus strain Fmb14]
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDADAMAKLAARVKQQQRPMTPNNRLQAMYPQDAIVLANRVGLAVGAWVEQRQHAYVLLPGPPKEFVPMV
DHELLPRLAKYSGHQEVLESRVMRFFGIGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI
GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDA
RQLAEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAQVYHFPGARNDVRKRAV
MTGMMMVLKRLRE

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=712353 NPA45_RS03990 WP_047678678.1 818781..820022(+) (cinA) [Lacticaseibacillus rhamnosus strain Fmb14]
ATGCAAGCAGAAATTATTGCTATCGGAACGGAAATTCTGATGGGACAAATTACAAATACAAATGGCGCGTATATGGCTAA
ACAACTGGCTACATTAGGAATTGCAAGCTATCATCAACAGGTTGTTGGGGATAACGCAAAACGACTGGCTGACGCGATAA
GTTTGGCGGAACAACGCAGTGATATCGTTATTTTGATTGGCGGTTTAGGACCGACACCGGATGATTTAACGAAGCAAACC
CTAGCCGCACACCTGAATTTACCCTTGGTGGAAGACGCTGACGCTATGGCCAAGTTGGCTGCGCGGGTTAAACAACAGCA
ACGTCCAATGACACCCAATAATCGCTTGCAAGCGATGTATCCCCAAGACGCAATCGTATTGGCCAATCGTGTCGGGTTGG
CGGTCGGCGCATGGGTTGAGCAGCGCCAACACGCCTATGTTTTATTGCCGGGACCACCTAAAGAGTTTGTGCCAATGGTT
GATCATGAACTGTTGCCACGACTGGCAAAATATAGCGGGCATCAGGAAGTTTTGGAAAGTCGCGTGATGCGTTTCTTTGG
TATCGGCGAATCGCAACTTGTGACGGATTTAAGTGATTTAATTGCCAACCAGACGAATCCGACACTTGCAACCTATATAA
AAGATCATGAGGTGACAGTTCGGGTAACTGCGAGTGGCAAAACACAAGCAGAAGCTGCGGCAAAACTTGAGCCAATGATC
GGCATCATTATGGATCGTGAAGGTCGCTACTTTTACGGCTACGGTGACGATAACAGTCTTGCTCAGGAATTAGTCAAAGC
ATTGGCGGCTAGTGATAAGCAAATTAGTGCCGCTGAAAGCCTGACTGCAGGTGCATTTCAAGCGGCATTGGGAGACGTTC
CTGGGGTCTCGGCTTATTTCAAAGGCGGCTTCGTTACGTACGCTTTAGCGACAAAAGCTGCATTTTTAAATATCGATGCT
CGTCAGCTAGCAGAACATGGTGTGGTGAGTGAATTTACTGCCAAAGCAATGGCAGAGCATGCTCGTCAACGAGCGGCGGC
AGACATTGCCGTTAGTTTTACCGGAGTTGCCGGTCCTGACAAGCTGGAAGGACAGCCAGCCGGCACCGTCTGGATTGGTT
TGGCGCGGTTAGGTGAGAAACCAATAGCACAGGTTTATCATTTTCCGGGTGCGCGAAATGACGTCCGCAAGCGCGCCGTT
ATGACGGGGATGATGATGGTGTTGAAGCGTTTACGCGAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.781

100

0.528
  cinA Streptococcus mitis NCTC 12261

51.781

100

0.528
  cinA Streptococcus pneumoniae TIGR4

51.306

100

0.523
  cinA Streptococcus pneumoniae Rx1

50.831

100

0.518
  cinA Streptococcus pneumoniae R6

50.831

100

0.518
  cinA Streptococcus pneumoniae D39

50.594

100

0.516
  cinA Streptococcus mutans UA159

50.966

100

0.511
  cinA Bacillus subtilis subsp. subtilis str. 168

44.417

99.758

0.443
  cinA Streptococcus suis isolate S10

41.534

91.525

0.38