Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   NOV99_RS00405 Genome accession   NZ_CP101844
Coordinates   71585..72736 (+) Length   383 a.a.
NCBI ID   WP_011922545.1    Uniprot ID   A0A075SNG0
Organism   Streptococcus suis strain 2018WUSS151     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 66585..77736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOV99_RS00385 (NOV99_00385) mutL 66937..68874 (+) 1938 WP_004194473.1 DNA mismatch repair endonuclease MutL -
  NOV99_RS00390 (NOV99_00390) ruvA 68913..69503 (+) 591 WP_004194470.1 Holliday junction branch migration protein RuvA -
  NOV99_RS00395 (NOV99_00395) - 69757..70326 (+) 570 WP_004194469.1 DNA-3-methyladenine glycosylase I -
  NOV99_RS00400 (NOV99_00400) - 70363..71533 (+) 1171 Protein_59 competence/damage-inducible protein A -
  NOV99_RS00405 (NOV99_00405) recA 71585..72736 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  NOV99_RS00410 (NOV99_00410) spx 72972..73370 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  NOV99_RS00415 (NOV99_00415) - 73470..73736 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  NOV99_RS00420 (NOV99_00420) ruvX 73736..74155 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  NOV99_RS00425 (NOV99_00425) - 74167..74487 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  NOV99_RS00430 (NOV99_00430) - 74745..75323 (+) 579 WP_044667815.1 nucleotidyltransferase family protein -
  NOV99_RS00435 (NOV99_00435) comX/sigX 75396..75662 (+) 267 WP_002939335.1 hypothetical protein Regulator
  NOV99_RS00440 (NOV99_00440) rpsJ 75984..76292 (+) 309 WP_002939332.1 30S ribosomal protein S10 -
  NOV99_RS00445 (NOV99_00445) rplC 76505..77131 (+) 627 WP_011921686.1 50S ribosomal protein L3 -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 40860.59 Da        Isoelectric Point: 4.8910

>NTDB_id=712296 NOV99_RS00405 WP_011922545.1 71585..72736(+) (recA) [Streptococcus suis strain 2018WUSS151]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVATEEAPVVAEEIQDVILDLDGGIELED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=712296 NOV99_RS00405 WP_011922545.1 71585..72736(+) (recA) [Streptococcus suis strain 2018WUSS151]
TTGGCTAAGAAACCAGGAAAAAAATTAGAAGATATTACAAAGAAATTTGGCGATGAGCGTAAAAAAGCGCTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGTGCTGTTATGCGTCTTGGTGAGCGTGCTGAACAAAAAGTTCAAGTCA
TGAGCTCAGGTAGTTTGTCAATCGACATTGCGCTTGGAGCGGGTGGCTATCCGAAAGGTCGTATCATTGAGATTTATGGT
CCAGAGAGTTCAGGTAAGACAACTGTTGCCCTTCATGCAGTAGCTCAAGCCCAGAAAGATGGTGGTATTGCTGCCTTTAT
CGATGCGGAACACGCCTTGGATCCAGCCTATGCAGCAGCTCTTGGTGTCAATATTGATGAGTTACTATTGTCACAGCCAG
ACTCAGGGGAACAAGGTCTTGAAATTGCAGGCAAGCTGATCGACTCTGGTGCGGTTGACTTGGTTGTTGTTGACTCGGTT
GCAGCCCTTGTACCACGTGCAGAAATCGATGGCGATATTGGTGATAGTCATGTTGGTCTGCAGGCTCGTATGATGAGTCA
GGCTATGCGCAAACTCGGAGCATCCATCAACAAAACTAAGACGGTAGCCATTTTCATTAACCAGTTGCGTGAAAAAGTCG
GTGTCATGTTTGGTAACCCTGAAACAACACCTGGTGGACGTGCGCTTAAATTCTATGCATCTGTCCGTATGGATGTTCGT
GGAAACACACAAATCAAAGGGACAGGCGACAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATTGTGAAGAA
CAAGGTGGCGCCACCATTTAAAGAAGCTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGTAACCTCGGCATCATCCAAAAAGCAGGTGCTTGGTATTCATATAATGGAGAAAAAATTGGCCAAGGTTCT
GAAAATGCTAAGAAATTCTTAGCAGATAATCCAGCAATCTTTGATGAAATTGACCGCAAGATACGTGTTCATTATGGCTT
GATTGAAGCAGATGGAGTTGAAGAAGTTGCGACCGAAGAAGCTCCTGTTGTTGCGGAAGAAATCCAAGATGTTATCCTAG
ATCTTGATGGCGGTATTGAATTAGAAGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A075SNG0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

85.938

100

0.862

  recA Streptococcus pyogenes NZ131

84.856

100

0.849

  recA Streptococcus pneumoniae R6

83.161

100

0.838

  recA Streptococcus pneumoniae Rx1

83.161

100

0.838

  recA Streptococcus pneumoniae D39

83.161

100

0.838

  recA Streptococcus pneumoniae TIGR4

83.161

100

0.838

  recA Streptococcus mitis NCTC 12261

83.77

99.739

0.836

  recA Streptococcus mitis SK321

82.984

99.739

0.828

  recA Lactococcus lactis subsp. cremoris KW2

75.143

91.384

0.687

  recA Latilactobacillus sakei subsp. sakei 23K

63.585

93.211

0.593

  recA Bacillus subtilis subsp. subtilis str. 168

68.085

85.901

0.585

  recA Acinetobacter baumannii D1279779

60.116

90.339

0.543

  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538

  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538

  recA Neisseria gonorrhoeae strain FA1090

62.236

86.423

0.538

  recA Pseudomonas stutzeri DSM 10701

57.224

92.167

0.527

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.479

87.206

0.527

  recA Acinetobacter baylyi ADP1

61.538

84.856

0.522

  recA Vibrio cholerae strain A1552

61.538

84.856

0.522

  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

84.856

0.522

  recA Glaesserella parasuis strain SC1401

60.923

84.856

0.517

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

84.334

0.512

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.423

0.507

  recA Ralstonia pseudosolanacearum GMI1000

60.568

82.768

0.501

  recA Helicobacter pylori 26695

57.879

86.162

0.499

  recA Helicobacter pylori strain NCTC11637

57.879

86.162

0.499