Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NPA43_RS08255 Genome accession   NZ_CP101833
Coordinates   1655857..1656900 (+) Length   347 a.a.
NCBI ID   WP_099725781.1    Uniprot ID   A0A2G8IYI6
Organism   Bacillus pumilus strain NDY-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1650857..1661900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS08230 (NPA43_08230) - 1651638..1651895 (+) 258 WP_034317570.1 DUF3243 domain-containing protein -
  NPA43_RS08235 (NPA43_08235) - 1652027..1652818 (+) 792 WP_099725785.1 DUF3388 domain-containing protein -
  NPA43_RS08240 (NPA43_08240) - 1652842..1653756 (+) 915 WP_256499586.1 helix-turn-helix domain-containing protein -
  NPA43_RS08245 (NPA43_08245) pgsA 1653830..1654411 (+) 582 WP_099725783.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NPA43_RS08250 (NPA43_08250) cinA 1654429..1655679 (+) 1251 WP_230030178.1 competence/damage-inducible protein A Machinery gene
  NPA43_RS08255 (NPA43_08255) recA 1655857..1656900 (+) 1044 WP_099725781.1 recombinase RecA Machinery gene
  NPA43_RS08260 (NPA43_08260) rny 1657392..1658954 (+) 1563 WP_007499477.1 ribonuclease Y -
  NPA43_RS08265 (NPA43_08265) - 1659044..1659838 (+) 795 WP_099725780.1 TIGR00282 family metallophosphoesterase -
  NPA43_RS08270 (NPA43_08270) spoVS 1660041..1660301 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37867.06 Da        Isoelectric Point: 4.8402

>NTDB_id=712230 NPA43_RS08255 WP_099725781.1 1655857..1656900(+) (recA) [Bacillus pumilus strain NDY-10]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLDTNGVKATEEEGQEELEFKD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=712230 NPA43_RS08255 WP_099725781.1 1655857..1656900(+) (recA) [Bacillus pumilus strain NDY-10]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAGCAAACAGATACACGTATTTCAACAGTACCTAGTGGTTCGTTAGCACTTGATACTGCGCTTGGAATAGGTGGAT
ATCCTCGCGGTCGTATTATTGAAGTATACGGTCCAGAGAGTTCTGGTAAAACGACAGTGGCACTTCATGCAATTGCTGAG
GTTCAGCAGCAGGGAGGACAAGCAGCATTCATCGATGCAGAGCATGCACTAGATCCAGTTTATGCTCAAAAACTAGGTGT
CAATATTGATGAGCTGTTGCTTTCTCAGCCGGATACAGGAGAACAAGCACTTGAAATTGCAGAGGCACTTGTCCGCAGTG
GTGCAGTTGATATTGTTGTCATTGACTCAGTAGCTGCTCTTGTACCAAAAGCAGAGATTGAAGGAGACATGGGTGATTCA
CACGTTGGTCTTCAAGCCCGTTTGATGTCTCAAGCACTTCGTAAACTATCAGGTGCTATCAACAAATCGAAAACAATTGC
CATCTTTATTAACCAAATTCGTGAAAAAGTAGGGGTCATGTTCGGTAACCCTGAAACAACGCCTGGTGGACGTGCTCTGA
AGTTCTATTCATCTGTTCGTTTAGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAATGACATTATGGGAAATAAAACA
AGAATTAAAGTTGTGAAAAACAAGGTTGCACCGCCATTCCGTATTGCGGAAGTAGACATCATGTATGGTGAAGGAATCTC
AAAAGAGGGAGAAATCATCGACCTTGGAAGCGAACTAGATATCGTACAAAAGAGCGGAGCTTGGTATTCTTACCAAGAGG
AACGTCTTGGACAAGGCCGTGAAAATGCGAAACAGTTCCTTAAAGAAAACAAAGATATCCTTCTCATGATTCAAGAACAA
ATCAGAGAACACTACGGTTTGGATACAAACGGAGTGAAAGCAACCGAAGAAGAGGGACAAGAAGAATTGGAATTTAAAGA
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8IYI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.687

95.677

0.925
  recA Latilactobacillus sakei subsp. sakei 23K

75.077

93.66

0.703
  recA Streptococcus mitis SK321

67.151

99.135

0.666
  recA Streptococcus pneumoniae R6

69.091

95.101

0.657
  recA Streptococcus pneumoniae TIGR4

69.091

95.101

0.657
  recA Streptococcus pneumoniae D39

69.091

95.101

0.657
  recA Streptococcus mitis NCTC 12261

69.091

95.101

0.657
  recA Streptococcus pneumoniae Rx1

69.091

95.101

0.657
  recA Streptococcus mutans UA159

68.693

94.813

0.651
  recA Streptococcus pyogenes NZ131

67.988

94.524

0.643
  recA Lactococcus lactis subsp. cremoris KW2

66.364

95.101

0.631
  recA Neisseria gonorrhoeae strain FA1090

63.798

97.118

0.62
  recA Neisseria gonorrhoeae MS11

63.798

97.118

0.62
  recA Neisseria gonorrhoeae MS11

63.798

97.118

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.059

97.983

0.608
  recA Ralstonia pseudosolanacearum GMI1000

64.329

94.524

0.608
  recA Glaesserella parasuis strain SC1401

61.765

97.983

0.605
  recA Helicobacter pylori 26695

64.615

93.66

0.605
  recA Helicobacter pylori strain NCTC11637

64.615

93.66

0.605
  recA Acinetobacter baumannii D1279779

61.111

98.559

0.602
  recA Acinetobacter baylyi ADP1

60.882

97.983

0.597
  recA Vibrio cholerae strain A1552

64.174

92.507

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.507

0.594
  recA Pseudomonas stutzeri DSM 10701

61.562

95.965

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.236

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

93.084

0.559