Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NPA43_RS08250 Genome accession   NZ_CP101833
Coordinates   1654429..1655679 (+) Length   416 a.a.
NCBI ID   WP_230030178.1    Uniprot ID   -
Organism   Bacillus pumilus strain NDY-10     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1649429..1660679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS08225 (NPA43_08225) ymfI 1650836..1651564 (+) 729 WP_256499585.1 elongation factor P 5-aminopentanone reductase -
  NPA43_RS08230 (NPA43_08230) - 1651638..1651895 (+) 258 WP_034317570.1 DUF3243 domain-containing protein -
  NPA43_RS08235 (NPA43_08235) - 1652027..1652818 (+) 792 WP_099725785.1 DUF3388 domain-containing protein -
  NPA43_RS08240 (NPA43_08240) - 1652842..1653756 (+) 915 WP_256499586.1 helix-turn-helix domain-containing protein -
  NPA43_RS08245 (NPA43_08245) pgsA 1653830..1654411 (+) 582 WP_099725783.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NPA43_RS08250 (NPA43_08250) cinA 1654429..1655679 (+) 1251 WP_230030178.1 competence/damage-inducible protein A Machinery gene
  NPA43_RS08255 (NPA43_08255) recA 1655857..1656900 (+) 1044 WP_099725781.1 recombinase RecA Machinery gene
  NPA43_RS08260 (NPA43_08260) rny 1657392..1658954 (+) 1563 WP_007499477.1 ribonuclease Y -
  NPA43_RS08265 (NPA43_08265) - 1659044..1659838 (+) 795 WP_099725780.1 TIGR00282 family metallophosphoesterase -
  NPA43_RS08270 (NPA43_08270) spoVS 1660041..1660301 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45676.84 Da        Isoelectric Point: 4.9151

>NTDB_id=712229 NPA43_RS08250 WP_230030178.1 1654429..1655679(+) (cinA) [Bacillus pumilus strain NDY-10]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIANTLGKELVLNEEAFESIQDYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEEDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHEDEKETERLL
KETEAQILDRVGEYFYGYGDTSLVREVSKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSIFNGSVVCYTNQVKQQVLG
CREATLSSHGAVSKECALELAEGIRKLTGSDIGISFTGVAGPASQEGQPVGKVFIGLSTKDQKDVFEWMFTGSRSGIRKR
AVKYGLHHLLKLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=712229 NPA43_RS08250 WP_230030178.1 1654429..1655679(+) (cinA) [Bacillus pumilus strain NDY-10]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAGCTAGCTGAAATTGGTGTGAACGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAAGCCATTCAAGTAGCGCAGGAAAGATCTAATTTTATTATATTCTCAGGCGGTCTTGGACCAACAAAAGATGATTTA
ACAAAAGAAACCATTGCAAATACGCTCGGAAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCGAAAGACCGGACGTGACATGTCACCGAACAACCGTAAGCAGGCACTCGTTCTAGAAGGATCTGATGTGCTGGTGAACC
GGTTCGGGATGGCACCAGGTATGTTTATTCAAGAAGAAGATACGTTTTATATTCTGCTTCCTGGACCACCAAGTGAACTG
CACCCGATGTTTGAAAACGAGGCGAAGCCGCTGATTTCTGAGAAACTTGGCTTAAAAGAAAAAATCGTGTCTGTTGTGTT
GCGTTTCTTCGGAATCGGTGAATCACAGCTTGAAACAGACCTTGAAGATTTAATCGATGCTCAGACCAATCCGACGATTG
CACCGCTTGCAGCTGACGGTGAAGTGACACTAAGGCTCACAGCCAAGCACGAGGATGAAAAAGAAACGGAGCGTCTGTTA
AAAGAAACGGAAGCGCAAATTTTAGATCGGGTAGGCGAGTACTTCTACGGATATGGAGATACATCTCTTGTCCGTGAAGT
TTCCAAGGCCTTGCACGAACACGGGAAAACAGTAGCAGCCGCTGAAAGTCTGACTGGCGGCATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGGGCATCATCGATTTTTAACGGAAGTGTGGTTTGTTATACCAATCAAGTGAAGCAGCAGGTGCTTGGC
TGCCGGGAGGCAACGTTGTCTTCTCATGGCGCTGTCAGCAAAGAGTGCGCTTTAGAGCTCGCTGAGGGCATTAGAAAGCT
GACAGGAAGCGATATCGGTATTAGCTTCACTGGTGTGGCAGGACCTGCTAGCCAAGAAGGACAGCCTGTCGGAAAAGTGT
TCATTGGGCTATCCACTAAAGATCAGAAAGACGTGTTTGAATGGATGTTTACAGGCAGTCGATCAGGCATTCGAAAACGC
GCTGTGAAATATGGTCTGCATCACTTGCTTAAATTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

75.663

99.76

0.755
  cinA Streptococcus pneumoniae TIGR4

48.086

100

0.483
  cinA Streptococcus mitis SK321

48.086

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.847

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.847

100

0.481
  cinA Streptococcus pneumoniae R6

47.847

100

0.481
  cinA Streptococcus pneumoniae D39

47.608

100

0.478
  cinA Streptococcus mutans UA159

48.403

97.837

0.474
  cinA Streptococcus suis isolate S10

43.434

95.192

0.413