Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NM897_RS16095 Genome accession   NZ_CP101819
Coordinates   3236022..3237089 (-) Length   355 a.a.
NCBI ID   WP_068462779.1    Uniprot ID   A0A1C7E1B2
Organism   Planococcus maritimus strain KRIBB-KS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3231022..3242089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM897_RS16080 (NM897_16090) - 3232708..3233136 (-) 429 WP_182091341.1 RicAFT regulatory complex protein RicA family protein -
  NM897_RS16085 (NM897_16095) - 3233370..3234167 (-) 798 WP_341961393.1 TIGR00282 family metallophosphoesterase -
  NM897_RS16090 (NM897_16100) rny 3234235..3235794 (-) 1560 WP_068485904.1 ribonuclease Y -
  NM897_RS16095 (NM897_16105) recA 3236022..3237089 (-) 1068 WP_068462779.1 recombinase RecA Machinery gene
  NM897_RS16100 (NM897_16110) cinA 3237264..3238517 (-) 1254 WP_182091343.1 competence/damage-inducible protein A Machinery gene
  NM897_RS16105 (NM897_16115) pgsA 3238542..3239120 (-) 579 WP_182091344.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NM897_RS16110 (NM897_16120) - 3239170..3240042 (-) 873 WP_182091345.1 helix-turn-helix domain-containing protein -
  NM897_RS16115 (NM897_16125) - 3240060..3240860 (-) 801 WP_341961398.1 YmfK family protein -
  NM897_RS16120 (NM897_16130) - 3240948..3241667 (-) 720 WP_182091346.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38187.25 Da        Isoelectric Point: 5.3358

>NTDB_id=712151 NM897_RS16095 WP_068462779.1 3236022..3237089(-) (recA) [Planococcus maritimus strain KRIBB-KS-1]
MSDRKAALDMALKQIEKQFGKGSVMKLGESTGHNVSTVSSGSLSLDIALGIGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQASGGTAAFIDAEHALDPVYAKALGVNLDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSNTIAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEALKSGNDIIGNRT
KIKVVKNKVAPPFRTAEVDIMYGQGISREGEIVDLGADLDIVQKSGSWYSYNNERVGQGRENAKQFMREHEGIRNEIAGK
VREHYGMTAASYSVSVPKDDKKEAEDFNLLVDEEE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=712151 NM897_RS16095 WP_068462779.1 3236022..3237089(-) (recA) [Planococcus maritimus strain KRIBB-KS-1]
TTGAGCGATCGTAAAGCAGCGTTGGATATGGCGCTAAAGCAAATAGAAAAGCAATTCGGTAAAGGTTCTGTCATGAAATT
GGGTGAAAGTACGGGCCACAATGTCTCAACTGTTTCAAGTGGGTCATTGTCACTCGACATCGCACTCGGTATAGGCGGAT
ATCCGCGCGGACGGGTCATCGAAATCTACGGACCTGAAAGTTCTGGTAAAACGACTGTCTCACTTCATGCTATTGCTGAA
GTACAAGCTTCTGGCGGAACGGCTGCATTTATCGATGCAGAGCATGCACTTGACCCAGTCTACGCAAAAGCACTTGGTGT
TAATTTGGATGAACTATTGTTGTCTCAGCCAGATACAGGCGAGCAGGCACTTGAAATCGCAGAAGCGCTTGTGCGCAGCG
GTGCAGTAGACATCGTTGTTATTGACTCGGTAGCGGCACTTGTGCCAAAAGCTGAAATCGAAGGCGAAATGGGCGACTCT
CACGTCGGCTTGCAAGCTCGTCTCATGTCACAGGCTCTCCGTAAACTTTCGGGCGCCATCAACAAATCAAACACCATTGC
TGTATTTATCAACCAAATCCGTGAAAAAGTTGGCGTAATGTTCGGTAACCCAGAAGTAACACCGGGTGGACGCGCATTGA
AATTCTATTCATCTGTCCGCCTTGAAGTGCGTCGTGCAGAAGCATTGAAATCTGGCAATGACATCATCGGTAACCGGACG
AAGATCAAAGTCGTTAAAAATAAAGTAGCTCCACCATTCCGCACAGCGGAAGTTGACATTATGTACGGGCAAGGGATCTC
GCGTGAAGGCGAAATCGTCGACCTTGGTGCAGACCTCGACATCGTCCAAAAAAGCGGTTCATGGTATTCTTATAACAACG
AACGCGTTGGACAAGGCCGTGAAAACGCTAAACAATTCATGCGCGAGCATGAAGGTATACGTAATGAGATCGCTGGCAAA
GTCCGTGAACATTACGGCATGACAGCAGCGTCTTATTCCGTATCTGTACCTAAAGACGACAAGAAAGAAGCAGAAGACTT
CAACTTGCTTGTCGACGAAGAGGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7E1B2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.404

92.113

0.777
  recA Latilactobacillus sakei subsp. sakei 23K

72.521

99.437

0.721
  recA Streptococcus pyogenes NZ131

65.537

99.718

0.654
  recA Streptococcus mutans UA159

68.389

92.676

0.634
  recA Streptococcus mitis NCTC 12261

63.248

98.873

0.625
  recA Streptococcus pneumoniae D39

66.97

92.958

0.623
  recA Streptococcus pneumoniae R6

66.97

92.958

0.623
  recA Streptococcus pneumoniae TIGR4

66.97

92.958

0.623
  recA Streptococcus pneumoniae Rx1

66.97

92.958

0.623
  recA Streptococcus mitis SK321

62.963

98.873

0.623
  recA Lactococcus lactis subsp. cremoris KW2

66.364

92.958

0.617
  recA Glaesserella parasuis strain SC1401

60.684

98.873

0.6
  recA Acinetobacter baylyi ADP1

61.207

98.028

0.6
  recA Ralstonia pseudosolanacearum GMI1000

67.834

88.451

0.6
  recA Neisseria gonorrhoeae MS11

63.83

92.676

0.592
  recA Neisseria gonorrhoeae MS11

63.83

92.676

0.592
  recA Neisseria gonorrhoeae strain FA1090

63.83

92.676

0.592
  recA Acinetobacter baumannii D1279779

60.704

96.056

0.583
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.486

90.423

0.583
  recA Vibrio cholerae strain A1552

64.486

90.423

0.583
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.942

96.338

0.577
  recA Pseudomonas stutzeri DSM 10701

59.767

96.62

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.195

92.394

0.575
  recA Helicobacter pylori strain NCTC11637

62.769

91.549

0.575
  recA Helicobacter pylori 26695

62.462

91.549

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

90.141

0.561