Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NM897_RS16100 Genome accession   NZ_CP101819
Coordinates   3237264..3238517 (-) Length   417 a.a.
NCBI ID   WP_182091343.1    Uniprot ID   A0A7D7MAP1
Organism   Planococcus maritimus strain KRIBB-KS-1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3232264..3243517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM897_RS16080 (NM897_16090) - 3232708..3233136 (-) 429 WP_182091341.1 RicAFT regulatory complex protein RicA family protein -
  NM897_RS16085 (NM897_16095) - 3233370..3234167 (-) 798 WP_341961393.1 TIGR00282 family metallophosphoesterase -
  NM897_RS16090 (NM897_16100) rny 3234235..3235794 (-) 1560 WP_068485904.1 ribonuclease Y -
  NM897_RS16095 (NM897_16105) recA 3236022..3237089 (-) 1068 WP_068462779.1 recombinase RecA Machinery gene
  NM897_RS16100 (NM897_16110) cinA 3237264..3238517 (-) 1254 WP_182091343.1 competence/damage-inducible protein A Machinery gene
  NM897_RS16105 (NM897_16115) pgsA 3238542..3239120 (-) 579 WP_182091344.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NM897_RS16110 (NM897_16120) - 3239170..3240042 (-) 873 WP_182091345.1 helix-turn-helix domain-containing protein -
  NM897_RS16115 (NM897_16125) - 3240060..3240860 (-) 801 WP_341961398.1 YmfK family protein -
  NM897_RS16120 (NM897_16130) - 3240948..3241667 (-) 720 WP_182091346.1 SDR family oxidoreductase -
  NM897_RS16125 (NM897_16135) - 3241664..3242965 (-) 1302 WP_182091347.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45016.06 Da        Isoelectric Point: 4.6165

>NTDB_id=712152 NM897_RS16100 WP_182091343.1 3237264..3238517(-) (cinA) [Planococcus maritimus strain KRIBB-KS-1]
MNAEIIAVGSELLLGQITNTNARFISGHLAEIGINVYYHTVVGDNPERLKDSIAIAESRADVIIFSGGLGPTKDDLTKQT
IANHLGTTLSMDDAAMTSIAAYFDRVGRPMTENNKKQALVLEGSDVLVNDNGMAPGMMYQNGDHLYMLLPGPPHELEPMF
QFEAKPKLVRMLNQENIILSHVLRFYGIGEAELEDRLQDILDQQTNPTIAPLASAGEVTLRITAKTDTTDEAWKLIEGAK
EQILERVGDYLYGYDDDSLASKAIDLLKQQGKTISAAESLTAGLFQSELASVSGASAVLSGGVVTYNEQMKVQQLGIAPE
FFDKHSVVSKETAVAMATAALEKFGTDIAVSLTGAAGPDAHGEEPVGTVWIGIASAQGAETYRLELSGLRNTNRIRAVKL
ALHYLIRTLANEDARKI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=712152 NM897_RS16100 WP_182091343.1 3237264..3238517(-) (cinA) [Planococcus maritimus strain KRIBB-KS-1]
ATGAACGCTGAAATTATCGCAGTTGGCTCAGAGCTTCTGCTCGGCCAAATCACCAATACGAATGCCCGGTTCATATCCGG
GCACCTTGCTGAAATTGGCATCAATGTCTATTATCATACCGTGGTAGGCGACAACCCAGAACGGTTGAAAGATTCAATTG
CCATCGCCGAGTCTCGGGCAGATGTAATCATTTTTTCTGGCGGGCTCGGACCGACAAAAGATGATTTAACGAAACAGACC
ATCGCCAATCACCTCGGGACGACGCTTTCCATGGACGATGCAGCGATGACATCGATTGCGGCATATTTCGATCGTGTCGG
CCGCCCGATGACTGAAAACAACAAAAAGCAAGCGCTCGTGCTTGAAGGCAGCGATGTGCTCGTCAACGACAACGGCATGG
CGCCGGGAATGATGTACCAAAACGGCGATCATCTCTATATGCTACTGCCCGGACCGCCGCATGAGCTCGAGCCGATGTTC
CAATTCGAAGCGAAACCGAAATTGGTGCGCATGCTCAATCAAGAAAATATCATTCTTTCACACGTACTGCGCTTTTACGG
TATCGGAGAAGCGGAACTTGAAGACCGCCTGCAAGATATTTTAGATCAGCAAACCAACCCGACGATTGCCCCACTGGCTT
CAGCAGGGGAAGTAACGCTGCGCATTACGGCAAAGACCGATACTACAGATGAGGCATGGAAATTGATCGAGGGCGCAAAA
GAACAAATCTTAGAGCGTGTTGGCGACTATCTATACGGCTATGACGACGATTCTCTCGCGTCAAAAGCGATTGACTTATT
GAAACAGCAAGGTAAGACGATTTCAGCAGCAGAGAGCTTGACTGCCGGGCTGTTTCAGTCGGAGCTTGCTTCTGTCTCTG
GGGCAAGCGCCGTACTTAGTGGCGGGGTCGTCACTTATAATGAACAAATGAAAGTCCAGCAGCTCGGCATAGCGCCTGAG
TTTTTTGACAAACATTCTGTTGTGAGCAAAGAAACGGCCGTAGCAATGGCAACGGCTGCTTTGGAAAAATTCGGTACCGA
TATTGCCGTGAGCCTTACCGGTGCGGCTGGACCCGACGCCCATGGCGAAGAACCGGTCGGCACAGTATGGATCGGCATTG
CAAGCGCTCAAGGCGCCGAGACTTACCGGCTTGAACTATCGGGCCTTAGAAACACCAACCGTATTCGTGCTGTAAAACTG
GCGCTGCATTACCTGATACGAACACTGGCAAATGAAGATGCACGCAAAATTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D7MAP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

55.746

98.082

0.547
  cinA Streptococcus mitis NCTC 12261

45.477

98.082

0.446
  cinA Streptococcus pneumoniae TIGR4

45.455

97.602

0.444
  cinA Streptococcus mitis SK321

45.232

98.082

0.444
  cinA Streptococcus mutans UA159

44.231

99.76

0.441
  cinA Streptococcus pneumoniae Rx1

45.209

97.602

0.441
  cinA Streptococcus pneumoniae R6

45.209

97.602

0.441
  cinA Streptococcus pneumoniae D39

44.963

97.602

0.439
  cinA Streptococcus suis isolate S10

38.52

94.005

0.362