Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | NMH04_RS08710 | Genome accession | NZ_CP101609 |
| Coordinates | 1718780..1719823 (+) | Length | 347 a.a. |
| NCBI ID | WP_007499478.1 | Uniprot ID | A0A9X0KA92 |
| Organism | Bacillus altitudinis strain 47 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1698358..1740332 | 1718780..1719823 | within | 0 |
Gene organization within MGE regions
Location: 1698358..1740332
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMH04_RS08635 (NMH04_08610) | - | 1698912..1699148 (+) | 237 | WP_008344712.1 | YlzJ-like family protein | - |
| NMH04_RS08640 (NMH04_08615) | - | 1699259..1701634 (+) | 2376 | WP_173408012.1 | DNA translocase FtsK | - |
| NMH04_RS08645 (NMH04_08620) | - | 1701799..1702524 (+) | 726 | WP_008344706.1 | GntR family transcriptional regulator | - |
| NMH04_RS08650 (NMH04_08625) | - | 1702625..1703857 (+) | 1233 | WP_173408013.1 | MFS transporter | - |
| NMH04_RS08655 (NMH04_08630) | - | 1704177..1707293 (+) | 3117 | WP_173408014.1 | MMPL family transporter | - |
| NMH04_RS08660 (NMH04_08635) | - | 1707439..1708719 (+) | 1281 | WP_056704743.1 | pitrilysin family protein | - |
| NMH04_RS08665 (NMH04_08640) | - | 1708716..1710008 (+) | 1293 | WP_041507268.1 | pitrilysin family protein | - |
| NMH04_RS08670 (NMH04_08645) | - | 1710160..1710636 (+) | 477 | WP_024720380.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| NMH04_RS08675 (NMH04_08650) | - | 1710614..1713733 (+) | 3120 | WP_041507267.1 | MMPL family transporter | - |
| NMH04_RS08680 (NMH04_08655) | - | 1713763..1714491 (+) | 729 | WP_024720382.1 | SDR family oxidoreductase | - |
| NMH04_RS08685 (NMH04_08660) | - | 1714564..1714821 (+) | 258 | WP_003211590.1 | DUF3243 domain-containing protein | - |
| NMH04_RS08690 (NMH04_08665) | - | 1714953..1715744 (+) | 792 | WP_039166619.1 | DUF3388 domain-containing protein | - |
| NMH04_RS08695 (NMH04_08670) | - | 1715768..1716679 (+) | 912 | WP_041507265.1 | helix-turn-helix domain-containing protein | - |
| NMH04_RS08700 (NMH04_08675) | pgsA | 1716753..1717334 (+) | 582 | WP_008344688.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| NMH04_RS08705 (NMH04_08680) | cinA | 1717351..1718601 (+) | 1251 | WP_045034294.1 | competence/damage-inducible protein A | Machinery gene |
| NMH04_RS08710 (NMH04_08685) | recA | 1718780..1719823 (+) | 1044 | WP_007499478.1 | recombinase RecA | Machinery gene |
| NMH04_RS08715 (NMH04_08690) | rny | 1720124..1721686 (+) | 1563 | WP_003211958.1 | ribonuclease Y | - |
| NMH04_RS08720 (NMH04_08695) | - | 1721776..1722570 (+) | 795 | WP_019744184.1 | TIGR00282 family metallophosphoesterase | - |
| NMH04_RS08725 (NMH04_08700) | spoVS | 1722773..1723033 (+) | 261 | WP_003211281.1 | stage V sporulation protein SpoVS | - |
| NMH04_RS08730 (NMH04_08705) | - | 1723237..1726281 (+) | 3045 | WP_041507263.1 | efflux RND transporter permease subunit | - |
| NMH04_RS08735 (NMH04_08710) | tdh | 1726458..1727522 (+) | 1065 | WP_041507262.1 | L-threonine 3-dehydrogenase | - |
| NMH04_RS08740 (NMH04_08715) | - | 1727519..1728700 (+) | 1182 | WP_007499472.1 | glycine C-acetyltransferase | - |
| NMH04_RS08745 (NMH04_08720) | miaB | 1728859..1730385 (+) | 1527 | WP_007499471.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| NMH04_RS08750 (NMH04_08725) | - | 1730387..1730821 (+) | 435 | WP_008344661.1 | RicAFT regulatory complex protein RicA family protein | - |
| NMH04_RS08755 (NMH04_08730) | cotE | 1731070..1731615 (+) | 546 | WP_163116186.1 | outer spore coat protein CotE | - |
| NMH04_RS08760 (NMH04_08735) | mutS | 1731740..1734316 (+) | 2577 | WP_041507261.1 | DNA mismatch repair protein MutS | - |
| NMH04_RS08765 (NMH04_08740) | mutL | 1734339..1736240 (+) | 1902 | WP_100325020.1 | DNA mismatch repair endonuclease MutL | - |
| NMH04_RS08770 (NMH04_08745) | - | 1736291..1737403 (-) | 1113 | WP_255817013.1 | site-specific integrase | - |
| NMH04_RS08775 (NMH04_08750) | - | 1737439..1737882 (-) | 444 | WP_255817014.1 | ImmA/IrrE family metallo-endopeptidase | - |
| NMH04_RS08780 (NMH04_08755) | - | 1737901..1738320 (-) | 420 | WP_159159639.1 | helix-turn-helix domain-containing protein | - |
| NMH04_RS08785 (NMH04_08760) | - | 1738624..1738827 (+) | 204 | WP_216942344.1 | helix-turn-helix domain-containing protein | - |
| NMH04_RS08790 (NMH04_08765) | - | 1738827..1739096 (+) | 270 | WP_216942346.1 | group-specific protein | - |
| NMH04_RS08795 (NMH04_08770) | - | 1739249..1739898 (+) | 650 | Protein_1684 | Rha family transcriptional regulator | - |
| NMH04_RS08805 (NMH04_08780) | - | 1739959..1740309 (+) | 351 | WP_216942350.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 37820.95 Da Isoelectric Point: 4.7701
>NTDB_id=710791 NMH04_RS08710 WP_007499478.1 1718780..1719823(+) (recA) [Bacillus altitudinis strain 47]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLDTNGVKSTDEEGQEELELND
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLDTNGVKSTDEEGQEELELND
Nucleotide
Download Length: 1044 bp
>NTDB_id=710791 NMH04_RS08710 WP_007499478.1 1718780..1719823(+) (recA) [Bacillus altitudinis strain 47]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAGCAAACAGATACACGTATTTCAACAGTACCTAGTGGTTCGTTAGCACTTGATACTGCGCTTGGAATAGGTGGGT
ACCCTCGCGGCCGTATTATTGAAGTATATGGTCCAGAGAGTTCTGGTAAAACGACAGTAGCACTTCATGCGATTGCTGAG
GTTCAGCAGCAGGGAGGACAAGCTGCATTTATCGATGCGGAGCATGCGCTAGATCCAGTTTACGCTCAAAAATTAGGTGT
CAATATTGATGAGTTGTTACTTTCTCAGCCGGATACAGGAGAACAAGCACTTGAAATTGCAGAAGCACTTGTTCGTAGTG
GTGCAGTTGATATTGTTGTCATTGACTCAGTAGCTGCTCTTGTACCAAAAGCAGAGATCGAAGGAGACATGGGAGATTCA
CACGTTGGTCTTCAAGCACGTTTGATGTCTCAAGCACTTCGTAAACTATCTGGTGCTATCAACAAATCAAAAACAATTGC
GATCTTTATTAACCAAATTCGTGAAAAAGTAGGGGTTATGTTTGGTAATCCTGAAACAACGCCTGGTGGACGTGCACTTA
AGTTCTATTCATCTGTTCGTTTAGAAGTACGCCGTGCTGAACAGTTGAAACAAGGGAACGACATCATGGGGAACAAAACG
AGAATTAAAGTTGTGAAAAACAAAGTGGCACCGCCATTCCGTATTGCCGAAGTAGACATTATGTACGGTGAAGGTATCTC
GAAAGAGGGAGAAATCATCGACCTTGGAAGCGAACTAGATATCGTACAAAAGAGCGGGGCTTGGTATTCTTATCAAGAGG
AACGTCTTGGACAAGGACGTGAAAATGCGAAGCAATTCCTAAAAGAGAATAAAGACATTCTTCTTATGATTCAGGAGCAG
ATCAGGGAGCACTATGGTTTGGATACAAACGGAGTGAAATCAACTGACGAAGAAGGACAAGAAGAATTGGAATTGAATGA
CTAA
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAGCAAACAGATACACGTATTTCAACAGTACCTAGTGGTTCGTTAGCACTTGATACTGCGCTTGGAATAGGTGGGT
ACCCTCGCGGCCGTATTATTGAAGTATATGGTCCAGAGAGTTCTGGTAAAACGACAGTAGCACTTCATGCGATTGCTGAG
GTTCAGCAGCAGGGAGGACAAGCTGCATTTATCGATGCGGAGCATGCGCTAGATCCAGTTTACGCTCAAAAATTAGGTGT
CAATATTGATGAGTTGTTACTTTCTCAGCCGGATACAGGAGAACAAGCACTTGAAATTGCAGAAGCACTTGTTCGTAGTG
GTGCAGTTGATATTGTTGTCATTGACTCAGTAGCTGCTCTTGTACCAAAAGCAGAGATCGAAGGAGACATGGGAGATTCA
CACGTTGGTCTTCAAGCACGTTTGATGTCTCAAGCACTTCGTAAACTATCTGGTGCTATCAACAAATCAAAAACAATTGC
GATCTTTATTAACCAAATTCGTGAAAAAGTAGGGGTTATGTTTGGTAATCCTGAAACAACGCCTGGTGGACGTGCACTTA
AGTTCTATTCATCTGTTCGTTTAGAAGTACGCCGTGCTGAACAGTTGAAACAAGGGAACGACATCATGGGGAACAAAACG
AGAATTAAAGTTGTGAAAAACAAAGTGGCACCGCCATTCCGTATTGCCGAAGTAGACATTATGTACGGTGAAGGTATCTC
GAAAGAGGGAGAAATCATCGACCTTGGAAGCGAACTAGATATCGTACAAAAGAGCGGGGCTTGGTATTCTTATCAAGAGG
AACGTCTTGGACAAGGACGTGAAAATGCGAAGCAATTCCTAAAAGAGAATAAAGACATTCTTCTTATGATTCAGGAGCAG
ATCAGGGAGCACTATGGTTTGGATACAAACGGAGTGAAATCAACTGACGAAGAAGGACAAGAAGAATTGGAATTGAATGA
CTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.