Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NLV76_RS09440 Genome accession   NZ_CP100752
Coordinates   1805635..1806681 (+) Length   348 a.a.
NCBI ID   WP_254503489.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1800635..1811681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS09410 (NLV76_09410) - 1800645..1801373 (+) 729 WP_254503487.1 SDR family oxidoreductase -
  NLV76_RS09415 (NLV76_09415) - 1801453..1801710 (+) 258 WP_044155842.1 DUF3243 domain-containing protein -
  NLV76_RS09420 (NLV76_09420) - 1801840..1802631 (+) 792 WP_024121452.1 YmfK family protein -
  NLV76_RS09425 (NLV76_09425) - 1802698..1803562 (+) 865 Protein_1806 helix-turn-helix domain-containing protein -
  NLV76_RS09430 (NLV76_09430) pgsA 1803612..1804193 (+) 582 WP_010334305.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NLV76_RS09435 (NLV76_09435) cinA 1804212..1805462 (+) 1251 WP_254503488.1 competence/damage-inducible protein A Machinery gene
  NLV76_RS09440 (NLV76_09440) recA 1805635..1806681 (+) 1047 WP_254503489.1 recombinase RecA Machinery gene
  NLV76_RS09445 (NLV76_09445) - 1806860..1808038 (+) 1179 WP_254503490.1 serine hydrolase -
  NLV76_RS09450 (NLV76_09450) rny 1808325..1809887 (+) 1563 WP_254503491.1 ribonuclease Y -
  NLV76_RS09455 (NLV76_09455) ymdB 1809949..1810743 (+) 795 WP_003245138.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  NLV76_RS09460 (NLV76_09460) spoVS 1810943..1811203 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38043.17 Da        Isoelectric Point: 4.7281

>NTDB_id=706679 NLV76_RS09440 WP_254503489.1 1805635..1806681(+) (recA) [Bacillus halotolerans strain MEC_B301]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPEGSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEDLLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVVQQQAEETQEELEFEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=706679 NLV76_RS09440 WP_254503489.1 1805635..1806681(+) (recA) [Bacillus halotolerans strain MEC_B301]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAGCAGTTCGGCAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGCGGCTCCCTCGCTCTTGATACGGCACTGGGAATTGGCGGAT
ATCCGCGCGGACGGATTATTGAAGTATACGGTCCTGAAGGCTCAGGTAAAACAACTGTTGCGCTCCATGCGATTGCTGAG
GTTCAGCAGCAGGGAGGACAAGCTGCGTTTATCGATGCGGAGCACGCGCTAGACCCGGTATACGCACAAAAACTCGGTGT
CAATATCGAAGACCTTTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATAGCAGAAGCGTTGGTTCGAAGCG
GTGCAGTTGACATCGTTGTTGTCGACTCTGTAGCGGCGCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCA
CATGTCGGTTTGCAGGCACGTTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCTATCAACAAATCGAAAACAATTGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGAAACCCGGAAACGACTCCCGGCGGTCGTGCGCTGA
AATTCTACTCTTCCGTTCGTCTTGAAGTACGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTTATGGGGAATAAAACG
AGAATTAAAGTTGTGAAAAACAAGGTGGCTCCTCCGTTCCGTACAGCTGAGGTTGATATTATGTATGGAGAAGGTATCTC
AAAAGAAGGCGAAATCATTGATCTCGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCCAAACAATTCTTAAAAGAAAATAAAGATATCATGCTTATGATTCAGGAGCAA
ATTCGTGAACATTACGGCTTAGATAATAACGGAGTAGTACAGCAGCAGGCGGAAGAGACACAGGAAGAACTCGAATTTGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

99.138

100

0.991
  recA Latilactobacillus sakei subsp. sakei 23K

75.229

93.966

0.707
  recA Streptococcus pneumoniae R6

65.625

100

0.664
  recA Streptococcus pneumoniae TIGR4

65.625

100

0.664
  recA Streptococcus pneumoniae D39

65.625

100

0.664
  recA Streptococcus pneumoniae Rx1

65.625

100

0.664
  recA Streptococcus mutans UA159

65.23

100

0.652
  recA Streptococcus mitis SK321

65.13

99.713

0.649
  recA Streptococcus mitis NCTC 12261

67.879

94.828

0.644
  recA Neisseria gonorrhoeae MS11

63.295

99.425

0.629
  recA Neisseria gonorrhoeae MS11

63.295

99.425

0.629
  recA Neisseria gonorrhoeae strain FA1090

63.295

99.425

0.629
  recA Streptococcus pyogenes NZ131

66.768

94.253

0.629
  recA Helicobacter pylori strain NCTC11637

62.5

98.851

0.618
  recA Helicobacter pylori 26695

62.5

98.851

0.618
  recA Lactococcus lactis subsp. cremoris KW2

64.848

94.828

0.615
  recA Ralstonia pseudosolanacearum GMI1000

64.438

94.54

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.696

98.276

0.606
  recA Vibrio cholerae strain A1552

60.174

98.851

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.174

98.851

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.997

93.966

0.592
  recA Glaesserella parasuis strain SC1401

59.71

99.138

0.592
  recA Acinetobacter baumannii D1279779

60.651

97.126

0.589
  recA Pseudomonas stutzeri DSM 10701

63.125

91.954

0.58
  recA Acinetobacter baylyi ADP1

61.801

92.529

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.752

92.816

0.555