Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NLV76_RS09435 Genome accession   NZ_CP100752
Coordinates   1804212..1805462 (+) Length   416 a.a.
NCBI ID   WP_254503488.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1799212..1810462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS09405 (NLV76_09405) - 1799306..1800592 (+) 1287 WP_254503486.1 pitrilysin family protein -
  NLV76_RS09410 (NLV76_09410) - 1800645..1801373 (+) 729 WP_254503487.1 SDR family oxidoreductase -
  NLV76_RS09415 (NLV76_09415) - 1801453..1801710 (+) 258 WP_044155842.1 DUF3243 domain-containing protein -
  NLV76_RS09420 (NLV76_09420) - 1801840..1802631 (+) 792 WP_024121452.1 YmfK family protein -
  NLV76_RS09425 (NLV76_09425) - 1802698..1803562 (+) 865 Protein_1806 helix-turn-helix domain-containing protein -
  NLV76_RS09430 (NLV76_09430) pgsA 1803612..1804193 (+) 582 WP_010334305.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NLV76_RS09435 (NLV76_09435) cinA 1804212..1805462 (+) 1251 WP_254503488.1 competence/damage-inducible protein A Machinery gene
  NLV76_RS09440 (NLV76_09440) recA 1805635..1806681 (+) 1047 WP_254503489.1 recombinase RecA Machinery gene
  NLV76_RS09445 (NLV76_09445) - 1806860..1808038 (+) 1179 WP_254503490.1 serine hydrolase -
  NLV76_RS09450 (NLV76_09450) rny 1808325..1809887 (+) 1563 WP_254503491.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45442.70 Da        Isoelectric Point: 5.1474

>NTDB_id=706678 NLV76_RS09435 WP_254503488.1 1804212..1805462(+) (cinA) [Bacillus halotolerans strain MEC_B301]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIVFSGGLGPTKDDL
TKETIANVLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHDSRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKDLSKACKEKGITLSAAESFTGGLFSEWLTDLSGASALFSGGVVCYSNEVKQNVLG
VKKETLDRFGAVSEECASELAKGVQRLTGSDIGISFTGVAGPDTQEGHAPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=706678 NLV76_RS09435 WP_254503488.1 1804212..1805462(+) (cinA) [Bacillus halotolerans strain MEC_B301]
ATGGAATTTCCAAAAAAAGCAGAGATTATTGCAGTCGGTTCAGAGCTCTTACTTGGTCAGATTGCTAATACAAATGCTCA
ATTTATCAGCAAACAGCTGGCAGAAATCGGAGTAAACGTATTTTACCATACAGCAGTCGGTGATAATCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAGCGCTCTGATTTTATTGTTTTTTCAGGAGGGCTCGGACCGACAAAAGATGATTTA
ACAAAAGAAACGATAGCAAATGTGCTGGGACGCCCGCTCGTTTTAAATGATGAGGCGTTTCAATCCATTGAGGATTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTCATCGAAGGATCTGACGTACTGGCGAATC
ACTTTGGAATGGCGCCGGGAATGCTTACAGAGCATGATTCGCGCTTTTATATGCTTCTTCCCGGGCCGCCGAGCGAATTG
CGTCCGATGTTTGAAAATGAGGCAAAACCGCTTCTTCTTAAAAAGATGGGCTCCAATGAAAAAATTGTATCAACTGTTCT
TCGCTTTTTCGGTATCGGCGAGTCTCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCACAGACGAACCCGACGATCG
CTCCGTTGGCAGCGGACGGAGAGGTGACGCTTCGCCTGACAGCAAAACATGCCGATGAAAAAGAAACGGAGCGTTTGTTA
AAAGAAACAGAAGCCGTTATTTTAGAACGTGTCGGTGAATTTTTCTATGGCTACGACGATACATCGCTTGTGAAAGACCT
ATCTAAAGCATGTAAGGAAAAAGGCATCACGCTTTCTGCCGCAGAAAGCTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CAGACCTTAGCGGCGCTTCAGCATTGTTTTCCGGCGGCGTTGTTTGCTATTCAAACGAAGTGAAGCAAAATGTGCTCGGC
GTCAAAAAGGAAACATTGGACCGTTTCGGCGCAGTCAGCGAGGAATGCGCATCTGAGCTCGCAAAGGGTGTTCAGCGGCT
CACTGGAAGCGATATTGGCATTAGCTTTACCGGTGTTGCCGGCCCTGATACTCAAGAAGGCCATGCACCTGGACATGTGT
TTATCGGTATTTCTGCAAACGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCAGGCTCCAGAACAGGAATCAGAAAACGT
GCTGCTAAATATGGCTGCCATTTAATTTTAAAACTGTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

95.913

100

0.959
  cinA Streptococcus mutans UA159

46.973

99.279

0.466
  cinA Streptococcus mitis SK321

46.411

100

0.466
  cinA Streptococcus mitis NCTC 12261

46.411

100

0.466
  cinA Streptococcus pneumoniae TIGR4

46.172

100

0.464
  cinA Streptococcus pneumoniae Rx1

45.933

100

0.462
  cinA Streptococcus pneumoniae R6

45.933

100

0.462
  cinA Streptococcus pneumoniae D39

45.694

100

0.459
  cinA Streptococcus suis isolate S10

41.176

93.99

0.387